Detailed information NTG0109856

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABXS89_RS00450
• Genome accession: NZ_AP031495
• Coordinates: 93224..94123 (-)
• Length: 299 a.a.
• NCBI ID: WP_353671611.1
• Uniprot ID: -
• Organism: Psychrobacter alimentarius strain Psys_23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 88224..99123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXS89_RS00430 (Psyaliredsea_01000)	recN	88734..90412 (-)	1679	Protein_85	DNA repair protein RecN	-
ABXS89_RS00435 (Psyaliredsea_01010)	-	91131..91466 (+)	336	WP_062843514.1	pyrimidine/purine nucleoside phosphorylase	-
ABXS89_RS00440 (Psyaliredsea_01020)	rlmB	91677..92447 (+)	771	WP_353670701.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABXS89_RS00445 (Psyaliredsea_01030)	coaE	92410..93093 (-)	684	WP_353670702.1	dephospho-CoA kinase	-
ABXS89_RS00450 (Psyaliredsea_01040)	pilD	93224..94123 (-)	900	WP_353671611.1	prepilin peptidase	Machinery gene
ABXS89_RS00455 (Psyaliredsea_01050)	pilC	94131..94841 (-)	711	WP_353671612.1	type II secretion system F family protein	Machinery gene
ABXS89_RS00460	-	94830..95119 (-)	290	Protein_91	type II secretion system F family protein	-
ABXS89_RS00465 (Psyaliredsea_01060)	-	95116..95352 (-)	237	WP_353670703.1	hypothetical protein	-
ABXS89_RS00470	pilB	95571..97276 (-)	1706	Protein_93	type IV-A pilus assembly ATPase PilB	-
ABXS89_RS00475 (Psyaliredsea_01090)	tpiA	97712..98518 (+)	807	WP_353670704.1	triose-phosphate isomerase	-
ABXS89_RS00480 (Psyaliredsea_01100)	secG	98733..99041 (+)	309	WP_025652589.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33055.48 Da
• Isoelectric Point: 7.9708

>NTDB_id=109856 ABXS89_RS00450 WP_353671611.1 93224..94123(-) (pilD) [Psychrobacter alimentarius strain Psys_23]
MQFIQLLQDNMTLALLVFGLLGLCVGSFLNVVIHRIPLIMIYDWRQECSQFISDQVDMPREHTQPLTNIVANDQPITLSR
PASHCPHCAHKIKWYENIPLISWLVLRGSCSDCKASIGLRYPLVELVTALLSVLVIYKFGVNTAGLSALILVWTLVALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQGWFVSPTQSIWGLLLGFLSLWIVVKIFYLITKKHGMGQGDFKLLAVLGAWLGPL
MLPLIILLSSLLGSIVGLILMKKQGESRPFAFGPYIAIAGIVALLYGSDIVSWYLGMYT

Nucleotide

• Length: 900 bp

>NTDB_id=109856 ABXS89_RS00450 WP_353671611.1 93224..94123(-) (pilD) [Psychrobacter alimentarius strain Psys_23]
ATGCAATTTATACAGTTACTACAAGACAATATGACCCTAGCTTTACTCGTATTTGGTTTATTGGGTCTTTGTGTTGGCAG
TTTTTTAAATGTGGTTATTCACCGTATTCCACTAATAATGATCTATGACTGGCGACAAGAGTGTAGTCAGTTCATCTCTG
ATCAGGTCGATATGCCACGTGAACATACGCAACCTTTAACCAACATTGTCGCAAATGATCAACCCATTACCTTGAGTCGA
CCAGCCTCACACTGCCCTCATTGTGCTCATAAAATTAAATGGTATGAAAATATCCCTTTAATTAGCTGGCTGGTATTGCG
AGGTAGTTGTTCAGACTGCAAAGCTTCGATTGGTCTGCGCTATCCTTTGGTTGAGTTGGTTACTGCCCTACTATCGGTAT
TAGTAATTTACAAATTTGGGGTGAATACCGCTGGGTTGTCCGCATTAATCTTGGTATGGACGCTCGTCGCTTTAACAGGC
ATTGATTTTGATACCCAGCTATTGCCCGATCGTCTAACCTTTCCATTAGCAGGCTTAGGGTTGGCCGTCAATTCGCAAGG
TTGGTTTGTCTCCCCTACTCAGTCCATCTGGGGCTTATTGCTTGGATTTTTGTCATTGTGGATAGTAGTTAAGATTTTTT
ATCTTATTACCAAAAAGCACGGCATGGGCCAAGGAGACTTTAAATTACTGGCCGTACTGGGTGCTTGGCTTGGGCCACTA
ATGTTACCGCTCATTATATTGTTGTCTTCCTTATTGGGATCTATCGTTGGATTGATCTTGATGAAAAAACAGGGTGAGAG
CCGGCCGTTCGCTTTTGGGCCTTATATCGCTATTGCGGGAATCGTTGCGTTATTATATGGTTCAGATATCGTCAGCTGGT
ATCTTGGCATGTATACTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (149-258)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	55.208	96.321	0.532
pilD	Acinetobacter baumannii D1279779	54.514	96.321	0.525
pilD	Vibrio cholerae strain A1552	48.746	93.311	0.455
pilD	Vibrio campbellii strain DS40M4	47.518	94.314	0.448
pilD	Neisseria gonorrhoeae MS11	40.714	93.645	0.381