Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACM6AU_RS10195 Genome accession   NZ_CP181097
Coordinates   2063017..2063412 (-) Length   131 a.a.
NCBI ID   WP_301555415.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0627     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2058017..2068412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AU_RS10170 (ACM6AU_10170) thiE 2058615..2059256 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  ACM6AU_RS10175 (ACM6AU_10175) thiM 2059258..2060049 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  ACM6AU_RS10180 (ACM6AU_10180) thiD 2060033..2060863 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACM6AU_RS10185 (ACM6AU_10185) tenA 2060856..2061545 (-) 690 WP_000396063.1 thiaminase II -
  ACM6AU_RS10190 (ACM6AU_10190) sceD 2061933..2062628 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  ACM6AU_RS10195 (ACM6AU_10195) ssb 2063017..2063412 (-) 396 WP_301555415.1 single-stranded DNA-binding protein Machinery gene
  ACM6AU_RS10200 (ACM6AU_10200) - 2063606..2064046 (+) 441 WP_000846751.1 YwpF-like family protein -
  ACM6AU_RS10205 (ACM6AU_10205) fabZ 2064102..2064542 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACM6AU_RS10210 (ACM6AU_10210) murA 2064576..2065841 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACM6AU_RS10215 (ACM6AU_10215) - 2065952..2066185 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACM6AU_RS10220 (ACM6AU_10220) - 2066782..2067186 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.15 Da        Isoelectric Point: 5.6824

>NTDB_id=1098194 ACM6AU_RS10195 WP_301555415.1 2063017..2063412(-) (ssb) [Staphylococcus aureus strain AG21-0627]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVVTHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1098194 ACM6AU_RS10195 WP_301555415.1 2063017..2063412(-) (ssb) [Staphylococcus aureus strain AG21-0627]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGTAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment