Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACM2W4_RS06360 Genome accession   NZ_CP181086
Coordinates   1341019..1342692 (+) Length   557 a.a.
NCBI ID   WP_270274023.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain B6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1336019..1347692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM2W4_RS06330 (ACM2W4_06330) - 1336339..1337190 (+) 852 WP_005235351.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  ACM2W4_RS06335 (ACM2W4_06335) xseA 1337191..1338543 (+) 1353 WP_416136023.1 exodeoxyribonuclease VII large subunit -
  ACM2W4_RS06340 (ACM2W4_06340) - 1338524..1338745 (+) 222 WP_005225774.1 exodeoxyribonuclease VII small subunit -
  ACM2W4_RS06345 (ACM2W4_06345) - 1338742..1339638 (+) 897 WP_081116532.1 polyprenyl synthetase family protein -
  ACM2W4_RS06350 (ACM2W4_06350) - 1339635..1340456 (+) 822 WP_005225776.1 TlyA family RNA methyltransferase -
  ACM2W4_RS06355 (ACM2W4_06355) argR 1340554..1341003 (+) 450 WP_005225777.1 arginine repressor -
  ACM2W4_RS06360 (ACM2W4_06360) recN 1341019..1342692 (+) 1674 WP_270274023.1 DNA repair protein RecN Machinery gene
  ACM2W4_RS06365 (ACM2W4_06365) - 1342788..1343519 (+) 732 WP_416136024.1 alpha/beta family hydrolase -
  ACM2W4_RS06370 (ACM2W4_06370) - 1343920..1344774 (+) 855 WP_034868500.1 phosphate ABC transporter substrate-binding protein PstS -
  ACM2W4_RS06375 (ACM2W4_06375) pstC 1344872..1345792 (+) 921 WP_005225781.1 phosphate ABC transporter permease subunit PstC -
  ACM2W4_RS06380 (ACM2W4_06380) pstA 1345792..1346676 (+) 885 WP_005225782.1 phosphate ABC transporter permease PstA -
  ACM2W4_RS06385 (ACM2W4_06385) pstB 1346690..1347496 (+) 807 WP_005225783.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62619.70 Da        Isoelectric Point: 4.4984

>NTDB_id=1098079 ACM2W4_RS06360 WP_270274023.1 1341019..1342692(+) (recN) [Enterococcus casseliflavus strain B6]
MLLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSSDYLRQGAEKCRLEGIFEWPNQQEFKELT
ADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSVLRQIGLFLVDIQGQNEHQELLQPEKHLALMDGFGDDDFKAELAS
YRQAYQAYRSLEKHVRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTNYQKIVDALGQSYGALSAEE
VNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYYLLQDAATDISRQVDNLELDEGRLEEVISRLETIRQLKRKYGESI
PVILAYYDEISKEISESAYTEGQLEQLEEELAQKAEAVWQLAEALHVKRRELAHRLEKEIVQELKELYMEHAQFEVRFAS
GSKQLSSSGFDTVEFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKIAK
IAANSQVLCITHLPQVAAVADNQYFIEKAIQEGRTETHVRKLSEEERVAEIARMLSGAEITDLTIEHARELLALAHR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=1098079 ACM2W4_RS06360 WP_270274023.1 1341019..1342692(+) (recN) [Enterococcus casseliflavus strain B6]
ATGCTTTTAGAATTGTCGATCCAAAATTTTGCGATTATCTCCAACCTGCACCTGTCTTTTCATGAGGGGATGACGGCTCT
AACAGGTGAAACAGGTGCTGGGAAATCAATCATTATCGATGCGATGGGCTTACTAGCAGGTGGCAGAGGATCCAGTGACT
ATTTGCGTCAAGGCGCAGAAAAATGCCGTTTGGAAGGGATTTTTGAATGGCCGAATCAGCAGGAGTTCAAAGAGCTGACC
GCAGATCTGGGTATTGATGAAGAGGAAGTTCTGATCGTACAACGGGATATCTCTCAATCGGGTAAAACTATTTGTCGTGT
AAATGGTCGAACCGTTACCTTGTCGGTTTTGCGCCAAATTGGCTTGTTTTTAGTTGATATTCAAGGACAAAATGAGCATC
AAGAGCTGCTGCAGCCAGAAAAACATTTGGCGTTGATGGATGGTTTTGGAGATGATGACTTTAAAGCAGAACTTGCAAGT
TACCGTCAAGCCTATCAAGCCTATCGCTCCTTAGAAAAACATGTGCGGACCATTCAAGAAAATGAGCAGCTCTATGTGCA
GCGAATGGACATGCTGCGTTTTCAACAAGAAGAGATCGCCCAAGCGGAATTGATGGAAAATGAAGAAGAGCAGCTGATCG
ATGAACGAGAAAAACTGACCAATTATCAAAAAATCGTGGATGCTCTAGGGCAAAGCTATGGCGCTCTATCCGCCGAAGAA
GTTAATAGCCTAGATGGAGTCAGTGTGGCATTATCAGAGATCCAGTCGATCGCCCATCTTGATCCCGCGTATGAAAAAAT
CAGTGAAGCGATCCAAAGTGCGTATTACTTGTTGCAAGATGCAGCCACTGATATTTCGCGGCAAGTCGACAACCTTGAAT
TAGATGAAGGCCGACTAGAAGAAGTCATTTCACGGCTGGAAACGATTCGTCAATTGAAGCGCAAATACGGGGAGTCAATT
CCTGTGATCCTTGCTTATTATGACGAGATCAGCAAAGAAATCAGCGAATCAGCCTATACGGAAGGTCAGTTGGAGCAATT
AGAAGAAGAGCTTGCCCAAAAAGCTGAAGCAGTTTGGCAGCTGGCGGAAGCCTTGCACGTCAAACGACGTGAATTGGCTC
ATCGTTTAGAAAAAGAAATCGTTCAAGAGTTAAAAGAGCTGTATATGGAGCACGCGCAATTTGAAGTACGGTTTGCATCT
GGCTCAAAACAATTAAGCAGCAGCGGCTTTGATACCGTGGAGTTTTATTTGACAACCAACCCCGGTGAAGGCATGAAACC
GTTAGTACGAGTTGCTTCTGGAGGAGAGCTTTCCCGGATCTTATTAGCGCTTAAATCGATTTTCTCCCGCAAGCAAGGAA
TCACTAGTATTGTCTTTGATGAGGTGGATACTGGGGTCAGTGGCCGAGTAGCTCAGGCGATCGCCGAAAAAATCGCCAAG
ATCGCTGCGAATTCGCAAGTCTTGTGTATCACCCACTTGCCGCAAGTAGCGGCTGTGGCGGACAATCAATATTTTATCGA
AAAAGCAATACAAGAAGGTCGGACAGAAACCCATGTCCGTAAATTATCAGAAGAAGAACGAGTGGCTGAGATCGCCCGTA
TGCTCTCAGGTGCAGAAATCACCGATTTAACGATCGAACATGCACGAGAACTATTGGCGCTGGCTCACCGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.719

100

0.488

Multiple sequence alignment