Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACM1PH_RS04980 Genome accession   NZ_CP181055
Coordinates   914275..916071 (-) Length   598 a.a.
NCBI ID   WP_416145556.1    Uniprot ID   -
Organism   Planococcus koreensis strain OC-PG-Soil     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 909275..921071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PH_RS04945 (ACM1PH_04945) - 909638..910438 (-) 801 WP_135505598.1 NAD kinase -
  ACM1PH_RS04950 (ACM1PH_04950) - 910435..911112 (-) 678 WP_135505596.1 GTP pyrophosphokinase -
  ACM1PH_RS04955 (ACM1PH_04955) - 911135..911524 (-) 390 WP_416145039.1 hypothetical protein -
  ACM1PH_RS04960 (ACM1PH_04960) - 911641..911910 (+) 270 WP_416145040.1 CYTH domain-containing protein -
  ACM1PH_RS04965 (ACM1PH_04965) - 911871..912233 (+) 363 WP_416145555.1 CYTH domain-containing protein -
  ACM1PH_RS04970 (ACM1PH_04970) - 912337..912735 (+) 399 WP_290212810.1 globin -
  ACM1PH_RS04975 (ACM1PH_04975) - 912732..913529 (+) 798 WP_135505588.1 ClpXP adapter SpxH family protein -
  ACM1PH_RS04980 (ACM1PH_04980) pepF 914275..916071 (-) 1797 WP_416145556.1 oligoendopeptidase F Regulator
  ACM1PH_RS04985 (ACM1PH_04985) - 916144..917232 (-) 1089 WP_416145041.1 competence protein CoiA -
  ACM1PH_RS04990 (ACM1PH_04990) mecA 917354..918010 (-) 657 WP_135502372.1 adaptor protein MecA -
  ACM1PH_RS04995 (ACM1PH_04995) spxA 918261..918656 (-) 396 WP_175580282.1 transcriptional regulator SpxA -
  ACM1PH_RS05000 (ACM1PH_05000) - 919036..920241 (-) 1206 WP_416145042.1 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68406.80 Da        Isoelectric Point: 4.7169

>NTDB_id=1097948 ACM1PH_RS04980 WP_416145556.1 914275..916071(-) (pepF) [Planococcus koreensis strain OC-PG-Soil]
MIVAEEVPAELTWKLEDIFAADEAWEQEFKEVAKLAEKSSSFQGTLGEGAEALYQAFTYKDELIQRLQKLYTYAHMRYDQ
DTTNSTYQAMDSRIKSLYAKVSTGLSFLTPEILSLDEAVLAGYVEEHDGLKLYKHALDELNAHRPHVLPAEQEALLAQLS
EVVSASSETFGMLNNADLEFPEIENEKGEKVRITHGNYSRFLENPDRRVREDAFKAVYATYGKFRNTFASTLAGNIKRDN
VNARIRKFKSAREAALADDHIPESVYDSLVETVNNNLHLLHRYAALRKEVLGLDKVHMWDMYTPLVKEVKMEFPYEKATE
TMLKGLEALGEEYTGIVEKGINSRWVDVKENKGKRSGAYSSGAYGTNPYVLMNWQDNVDNLFTLAHEFGHSVHSYYTRAA
QPYVYGDYSIFVAEVASTTNEALLNDYLVKTTEDDQERIYLLNHWLDGFRGTVFRQTMFAEFEHLIHKMDQEGEALTADR
LTEVYYELNKKYFGEDVAVDEEIGLEWSRIPHFYYNYYVFQYATGFSAATALSKGILEEGQPAIDRYINEFLKAGSSDYA
IEVLKKAGVDMTSPQPVEEACKVFEEKLNELEKLLLKK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=1097948 ACM1PH_RS04980 WP_416145556.1 914275..916071(-) (pepF) [Planococcus koreensis strain OC-PG-Soil]
ATTATTGTTGCGGAAGAAGTTCCTGCAGAATTAACATGGAAATTGGAAGACATTTTCGCTGCCGATGAAGCTTGGGAACA
GGAATTCAAAGAAGTGGCTAAACTCGCAGAGAAATCGTCATCTTTCCAAGGCACTTTAGGTGAAGGGGCGGAAGCTCTCT
ATCAAGCATTTACCTATAAAGATGAATTGATTCAACGTCTACAAAAGTTATACACGTATGCTCATATGCGTTATGACCAA
GACACAACGAATTCTACATACCAAGCGATGGATAGCCGCATCAAATCACTTTACGCAAAAGTTTCGACTGGACTGTCATT
CTTGACACCGGAAATCCTCAGCCTCGATGAAGCTGTGTTGGCCGGCTATGTGGAAGAACATGATGGACTAAAACTTTACA
AGCATGCACTCGATGAGTTGAATGCCCATCGGCCGCATGTGCTGCCTGCTGAACAGGAAGCTTTGCTGGCTCAATTGTCT
GAAGTGGTCAGTGCTTCTTCTGAAACGTTCGGCATGCTGAACAACGCCGATTTGGAATTTCCGGAAATCGAAAATGAAAA
AGGCGAAAAAGTCCGCATCACCCATGGCAATTACAGCCGCTTTTTGGAAAATCCGGATCGCCGGGTAAGGGAAGATGCGT
TCAAAGCGGTATACGCCACATACGGCAAATTCCGCAATACGTTTGCATCGACACTTGCCGGAAACATCAAACGCGACAAC
GTCAATGCACGGATCCGCAAATTCAAATCCGCACGTGAAGCAGCATTGGCGGACGACCACATACCGGAAAGCGTATATGA
CAGCTTGGTGGAAACGGTCAACAACAATCTCCACCTGCTTCATCGTTATGCTGCTTTGCGCAAAGAAGTACTGGGATTGG
ATAAAGTCCATATGTGGGATATGTACACACCGCTCGTCAAAGAAGTGAAAATGGAGTTCCCTTACGAAAAAGCGACAGAA
ACAATGCTTAAAGGCCTTGAAGCTCTAGGTGAGGAATACACAGGCATTGTTGAAAAAGGCATCAACAGCCGGTGGGTGGA
CGTCAAAGAGAACAAAGGGAAGCGCAGCGGTGCCTATTCCTCTGGAGCTTATGGCACGAACCCTTATGTCCTCATGAATT
GGCAGGATAACGTAGACAATTTGTTTACGCTTGCACATGAATTCGGCCACAGTGTCCATAGCTATTATACGCGTGCAGCA
CAGCCTTATGTCTACGGTGATTATTCAATATTTGTTGCAGAAGTGGCTTCAACGACAAATGAAGCACTGCTTAACGATTA
CTTGGTGAAAACGACAGAAGACGACCAAGAGCGCATCTATCTTCTTAACCACTGGCTTGACGGCTTCCGGGGAACTGTAT
TCCGCCAGACAATGTTTGCGGAGTTCGAGCACTTGATCCATAAAATGGACCAAGAAGGCGAAGCGCTGACAGCTGACCGC
CTGACGGAAGTGTATTATGAGCTGAATAAAAAATACTTCGGCGAAGATGTCGCGGTGGATGAAGAAATCGGTTTGGAATG
GTCTCGCATCCCACACTTCTACTATAATTATTATGTATTCCAATATGCGACGGGTTTCAGCGCAGCCACTGCGCTGAGCA
AAGGGATCCTTGAAGAAGGGCAGCCGGCTATAGACCGCTACATCAATGAGTTTCTTAAAGCAGGAAGCTCGGATTACGCA
ATTGAGGTCCTGAAAAAAGCTGGTGTCGACATGACATCCCCGCAGCCTGTTGAAGAAGCGTGCAAGGTTTTTGAAGAGAA
ATTAAACGAACTTGAAAAGCTTTTATTGAAGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-582)

Oligopeptidase F (Peptidase_M3_N)

(111-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.147

97.993

0.482

Multiple sequence alignment