Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACM1PH_RS00635 Genome accession   NZ_CP181055
Coordinates   116631..118328 (+) Length   565 a.a.
NCBI ID   WP_183736495.1    Uniprot ID   -
Organism   Planococcus koreensis strain OC-PG-Soil     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 111631..123328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM1PH_RS00610 (ACM1PH_00610) xseB 111954..112187 (+) 234 WP_135501209.1 exodeoxyribonuclease VII small subunit -
  ACM1PH_RS00615 (ACM1PH_00615) - 112184..113062 (+) 879 WP_416144540.1 polyprenyl synthetase family protein -
  ACM1PH_RS00620 (ACM1PH_00620) dxs 113156..115057 (+) 1902 WP_416145530.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACM1PH_RS00625 (ACM1PH_00625) - 115054..115875 (+) 822 WP_416144541.1 TlyA family RNA methyltransferase -
  ACM1PH_RS00630 (ACM1PH_00630) ahrC 116167..116616 (+) 450 WP_135501202.1 transcriptional regulator AhrC/ArgR -
  ACM1PH_RS00635 (ACM1PH_00635) recN 116631..118328 (+) 1698 WP_183736495.1 DNA repair protein RecN Machinery gene
  ACM1PH_RS00640 (ACM1PH_00640) - 118363..118776 (+) 414 WP_416144542.1 response regulator -
  ACM1PH_RS00645 (ACM1PH_00645) - 118800..119120 (+) 321 WP_416145531.1 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  ACM1PH_RS00650 (ACM1PH_00650) - 119315..120040 (+) 726 WP_416144543.1 glycerophosphodiester phosphodiesterase -
  ACM1PH_RS00655 (ACM1PH_00655) - 120067..120300 (-) 234 WP_135504737.1 DUF2627 domain-containing protein -
  ACM1PH_RS00660 (ACM1PH_00660) - 120426..122466 (+) 2041 Protein_130 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63219.87 Da        Isoelectric Point: 5.2732

>NTDB_id=1097942 ACM1PH_RS00635 WP_183736495.1 116631..118328(+) (recN) [Planococcus koreensis strain OC-PG-Soil]
MLRELDIRNFAIIEALTVSFTEGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSIEDAKHPVFAK
LADFGMEPTDGEILLRRELNDKGKNVCRVNGKLVTISILREIGGALIDIHGQHETQELMDEKQHLHLLDQFAGNSLGKAK
ESYSHTYDKYMKLKREFASYNENEQQIAQRIDLLTFQLREIEAAELIAGEEEDLLQERKKLQNFTKIYESVSAAHEAIQG
ESKGLDWVGSAMSELEHAASVDEQFGSHSELVSSAFYQLQDVSSEIKRLIDDMEFDPSRLNEIEQRLALIQSLKRKYGAS
VEDILIYHEQQADELDKLVNRDQRYQLDQAKLKELTEDLRVDAEELTILRKKAASKLGKAIMEQLRELHMGKASFEVNFS
ALPNGRFDRNGGDVISFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKKVGKQRTTTAVHELDGQERTEEMSRMLSGAEITDLTLQHAEELLTLAKDR
KLSLR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=1097942 ACM1PH_RS00635 WP_183736495.1 116631..118328(+) (recN) [Planococcus koreensis strain OC-PG-Soil]
ATGCTGCGTGAATTGGATATACGCAATTTTGCAATCATCGAAGCGCTGACAGTCAGTTTTACAGAAGGACTGACCGTGTT
GACTGGGGAAACCGGCGCCGGAAAGTCGATTATCATAGATGCCGTGCATTTGCTTGCAGGTGGCCGCGGAAGCCAGGAAT
TTATCCGCCATGGCGCGAAGAAAGCTGAAATTGAAGGCCTTTTCTCGATAGAAGATGCCAAGCATCCGGTATTCGCTAAA
TTAGCGGATTTCGGCATGGAGCCGACAGATGGCGAGATTTTGCTGCGCCGCGAACTGAACGATAAAGGCAAAAACGTCTG
CCGCGTCAACGGGAAATTGGTGACGATTTCGATTCTGCGGGAAATTGGCGGGGCGCTGATCGACATCCACGGCCAGCATG
AAACCCAGGAGTTGATGGATGAGAAACAGCATCTGCATCTCTTGGATCAGTTCGCCGGGAATTCTTTGGGCAAGGCGAAA
GAAAGCTATTCGCACACCTACGATAAATACATGAAGCTGAAAAGGGAATTTGCGTCTTATAATGAAAACGAACAGCAAAT
TGCCCAGCGCATCGACTTGCTGACGTTCCAATTGCGGGAAATCGAAGCTGCGGAATTGATCGCGGGCGAAGAAGAGGATT
TACTGCAGGAAAGGAAAAAGCTGCAGAATTTCACCAAGATTTATGAATCGGTGTCTGCAGCCCATGAAGCCATTCAAGGC
GAATCAAAAGGGCTTGACTGGGTTGGTTCCGCGATGTCGGAACTCGAACATGCCGCGTCTGTCGATGAACAATTCGGCAG
CCATTCCGAACTGGTGTCAAGTGCGTTTTATCAGCTGCAGGACGTCTCTTCTGAAATCAAGCGATTGATTGACGATATGG
AATTCGACCCGAGCCGATTGAACGAAATCGAACAGCGCCTGGCATTGATCCAATCGTTGAAGCGCAAATACGGCGCTTCT
GTTGAAGATATTCTCATTTATCACGAACAGCAAGCGGATGAATTGGACAAACTCGTCAACCGTGACCAGCGTTATCAGCT
CGATCAAGCGAAGTTGAAGGAATTGACCGAAGACTTGCGCGTCGACGCGGAGGAATTGACCATTTTGCGGAAAAAAGCCG
CAAGCAAATTGGGCAAGGCGATCATGGAGCAATTGCGTGAACTGCACATGGGCAAAGCTTCTTTTGAAGTCAATTTCAGT
GCATTGCCAAACGGCCGATTTGACCGCAACGGCGGAGATGTCATTTCGTTCTATATTTCCACCAATCTTGGCGAGCCGCT
GAAGCCGCTGACGAAAGTTGCTTCAGGCGGCGAATTGTCGCGGATGATGCTGGCATTGAAGACGATTTTCTCGAAACACC
AAGGCATCACTTCGATCATATTCGATGAAGTGGACACGGGCGTCAGCGGCCGTGTCGCCCAAGCGATTGCCGAGAAGATT
GCGGCGATTTCCGTCCATTCGCAAGTTCTGTGCATTTCCCATTTGCCGCAGGTTGCAGCGATGGCGGATCAGCACCTCTT
TATAGAAAAGAAAGTCGGGAAGCAGCGTACGACAACGGCAGTCCACGAATTGGACGGCCAGGAACGTACCGAAGAAATGA
GCCGGATGCTGTCTGGTGCGGAAATCACTGATTTGACGCTGCAGCATGCCGAGGAATTGCTGACCCTTGCAAAAGATAGA
AAACTTTCGTTGCGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.536

Multiple sequence alignment