Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ABXG87_RS02130 Genome accession   NZ_AP031488
Coordinates   406134..406577 (+) Length   147 a.a.
NCBI ID   WP_353551749.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 401134..411577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02115 (Ssa13956_03560) gdhA 402206..403558 (+) 1353 WP_045772168.1 NADP-specific glutamate dehydrogenase -
  ABXG87_RS02120 (Ssa13956_03570) - 403839..405380 (+) 1542 WP_353551747.1 hypothetical protein -
  ABXG87_RS02125 (Ssa13956_03580) - 405538..405948 (+) 411 WP_014633963.1 peptide deformylase -
  ABXG87_RS02130 (Ssa13956_03590) rcrR 406134..406577 (+) 444 WP_353551749.1 MarR family transcriptional regulator Regulator
  ABXG87_RS02135 (Ssa13956_03600) rcrP 406581..408395 (+) 1815 WP_353551751.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02140 (Ssa13956_03610) rcrQ 408385..410163 (+) 1779 WP_353551753.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02145 (Ssa13956_03620) - 410271..410894 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17197.67 Da        Isoelectric Point: 9.3639

>NTDB_id=109778 ABXG87_RS02130 WP_353551749.1 406134..406577(+) (rcrR) [Streptococcus salivarius strain NBRC 13956]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKHFREAIHEQLLEGISKEDSETAFRVFHQIRMNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=109778 ABXG87_RS02130 WP_353551749.1 406134..406577(+) (rcrR) [Streptococcus salivarius strain NBRC 13956]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCTCAAGGATTTGCTGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAAGCTCGAGA
TGTCAAACATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATTCTGAAACAGCCTTTCGTG
TCTTTCACCAAATTCGTATGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558

Multiple sequence alignment