Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABXG87_RS02140 Genome accession   NZ_AP031488
Coordinates   408385..410163 (+) Length   592 a.a.
NCBI ID   WP_353551753.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 403385..415163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02120 (Ssa13956_03570) - 403839..405380 (+) 1542 WP_353551747.1 hypothetical protein -
  ABXG87_RS02125 (Ssa13956_03580) - 405538..405948 (+) 411 WP_014633963.1 peptide deformylase -
  ABXG87_RS02130 (Ssa13956_03590) rcrR 406134..406577 (+) 444 WP_353551749.1 MarR family transcriptional regulator Regulator
  ABXG87_RS02135 (Ssa13956_03600) rcrP 406581..408395 (+) 1815 WP_353551751.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02140 (Ssa13956_03610) rcrQ 408385..410163 (+) 1779 WP_353551753.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02145 (Ssa13956_03620) - 410271..410894 (+) 624 WP_002886697.1 GNAT family N-acetyltransferase -
  ABXG87_RS02150 (Ssa13956_03630) - 411042..411665 (+) 624 WP_049529160.1 GTP pyrophosphokinase family protein -
  ABXG87_RS02155 (Ssa13956_03640) - 411667..412344 (+) 678 WP_084871162.1 response regulator transcription factor -
  ABXG87_RS02160 (Ssa13956_03650) - 412358..413581 (+) 1224 WP_049529158.1 HAMP domain-containing sensor histidine kinase -
  ABXG87_RS02165 (Ssa13956_03660) pyrH 413819..414556 (+) 738 WP_002885551.1 UMP kinase -
  ABXG87_RS02170 (Ssa13956_03670) frr 414571..415128 (+) 558 WP_002885567.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65070.09 Da        Isoelectric Point: 5.1038

>NTDB_id=109780 ABXG87_RS02140 WP_353551753.1 408385..410163(+) (rcrQ) [Streptococcus salivarius strain NBRC 13956]
MGNKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGILTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=109780 ABXG87_RS02140 WP_353551753.1 408385..410163(+) (rcrQ) [Streptococcus salivarius strain NBRC 13956]
ATGGGAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGGATTACACCTACTAAAATGGGGACAATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTTGGTTACTTACAAAGCTTTACGGTTGCGACAGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAATAGTGTTCCTCTTAATTATTTTGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAAGGTTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTCATCATGGGCTTCTCGCAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACGGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAAAGCAGTCAAGCTTTCAAGGGA
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTTATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTATCTTGACGATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCCCAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCCC
TTGCTAAGCCAGGTCAAAAGATTGCGATCGTTGGTCCAACAGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATTACCATTGACGGTGTGGATACTAATGACATGAAACGTGAAACCGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCTAAGGCTGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGGTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGACGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCAGTTGACACCCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATTCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689

Multiple sequence alignment