Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   ABXG87_RS01825 Genome accession   NZ_AP031488
Coordinates   349377..350696 (+) Length   439 a.a.
NCBI ID   WP_045768751.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344377..355696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS01800 (Ssa13956_03030) - 345220..345984 (+) 765 WP_002886634.1 ABC transporter ATP-binding protein -
  ABXG87_RS01805 (Ssa13956_03040) - 345984..346694 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  ABXG87_RS01810 (Ssa13956_03050) - 346829..347488 (+) 660 WP_002886636.1 CBS and ACT domain-containing protein -
  ABXG87_RS01815 (Ssa13956_03060) cysK 347668..348594 (-) 927 WP_002883742.1 cysteine synthase A -
  ABXG87_RS01820 (Ssa13956_03070) - 348696..349322 (-) 627 WP_045768752.1 YigZ family protein -
  ABXG87_RS01825 (Ssa13956_03080) comFA/cflA 349377..350696 (+) 1320 WP_045768751.1 DEAD/DEAH box helicase Machinery gene
  ABXG87_RS01830 (Ssa13956_03090) - 350677..351339 (+) 663 WP_353551724.1 ComF family protein -
  ABXG87_RS01835 (Ssa13956_03100) raiA 351418..351966 (+) 549 WP_002883786.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 50649.59 Da        Isoelectric Point: 8.9952

>NTDB_id=109777 ABXG87_RS01825 WP_045768751.1 349377..350696(+) (comFA/cflA) [Streptococcus salivarius strain NBRC 13956]
MVPKEYYGRLFTKEQLSVDYHSEAFTLESMIKVDKQLRCKRCYSQIEEDWQLPEGQYYCRACIVFGRNQEGKELYYFPSK
TSEIEFPALKWLGELTPYQAEVSEKLLETYQKQKDSLVHAVTGAGKTEMIYKIVAYVLESKGNVAIASPRVDVCRELFLR
MQRDFTCSISLLHAESEPYDGSPLVIATTHQLLKFYQNFDLVIVDEVDAFPFVGNVMLNHAVEQAKKETGRYIYLTATST
ISLEEQVRLGALEKHHLARRFHGNPLVLPKFFWQGRLQKSLMRGKLPRPLVYQIKKQRKSKFPLLIFFPNIAIGEKFTSI
LQKYLPDEKMAFVSSKSEERSATVEQFREKELSILVTTTILERGVTFPQVDVFVCMANHHLYTSSSLIQIGGRVGRSPDR
PTGKLYFFHEGLSKSMLRCREEIKVMNKKGGFNNEVSTM

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=109777 ABXG87_RS01825 WP_045768751.1 349377..350696(+) (comFA/cflA) [Streptococcus salivarius strain NBRC 13956]
ATGGTACCTAAAGAATATTATGGACGACTATTTACGAAAGAACAGTTGTCAGTGGACTATCACTCAGAGGCTTTTACATT
AGAAAGCATGATAAAGGTCGATAAACAACTTAGATGTAAAAGATGTTACAGTCAGATAGAGGAAGATTGGCAATTACCGG
AAGGTCAGTATTATTGCAGAGCGTGTATTGTCTTTGGCAGAAACCAAGAAGGAAAAGAACTTTATTATTTTCCTTCAAAA
ACATCTGAAATTGAATTTCCTGCTTTGAAGTGGTTGGGGGAACTGACTCCCTATCAAGCTGAGGTCTCAGAGAAGCTTTT
AGAAACATATCAAAAACAGAAAGACAGCCTCGTACATGCTGTGACTGGTGCTGGGAAGACCGAGATGATTTATAAAATCG
TTGCCTATGTTCTTGAAAGTAAAGGTAATGTAGCTATCGCAAGTCCTCGGGTTGATGTTTGTCGAGAGTTATTTCTTCGT
ATGCAGAGGGATTTTACTTGTAGTATTTCTCTGCTTCATGCTGAGAGTGAACCATATGATGGTAGTCCGCTTGTAATAGC
TACCACCCATCAACTACTAAAGTTTTACCAGAACTTTGACCTAGTTATCGTTGATGAGGTTGATGCATTCCCTTTTGTAG
GAAATGTCATGTTAAATCATGCTGTGGAGCAGGCAAAGAAGGAAACCGGTCGCTATATTTACTTAACAGCGACTTCTACA
ATATCTTTAGAAGAGCAAGTTCGACTTGGAGCTTTAGAAAAACATCACCTTGCCAGACGTTTCCATGGAAATCCTTTAGT
ACTTCCTAAATTCTTCTGGCAAGGAAGATTACAAAAATCTCTAATGAGAGGCAAGCTTCCAAGACCTCTTGTTTATCAGA
TTAAAAAGCAACGTAAATCAAAGTTTCCTCTATTAATATTTTTCCCAAATATAGCGATAGGTGAAAAGTTTACTAGCATT
CTGCAAAAATATCTTCCAGATGAAAAAATGGCCTTTGTTTCTTCAAAAAGCGAGGAGCGTTCAGCTACCGTAGAGCAGTT
CCGGGAAAAAGAGTTATCCATCTTAGTGACAACAACTATCCTTGAACGTGGTGTAACCTTTCCACAAGTAGATGTTTTTG
TTTGTATGGCAAATCATCACTTATACACTAGTTCGAGTCTTATTCAGATAGGAGGTCGAGTTGGAAGATCCCCAGATAGA
CCGACAGGAAAGCTTTATTTCTTTCATGAAGGACTATCCAAATCTATGCTTCGTTGTCGAGAAGAAATAAAGGTTATGAA
TAAAAAAGGAGGATTTAACAATGAAGTGTCTACTATGTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(290-396)

Type III restriction enzyme, res subunit (ResIII)

(94-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

56.148

98.178

0.551
  comFA/cflA Streptococcus pneumoniae D39

56.148

98.178

0.551
  comFA/cflA Streptococcus pneumoniae R6

56.148

98.178

0.551
  comFA/cflA Streptococcus pneumoniae TIGR4

56.148

98.178

0.551
  comFA/cflA Streptococcus mitis NCTC 12261

55.3

98.861

0.547
  comFA/cflA Streptococcus mitis SK321

54.988

98.178

0.54
  comFA Lactococcus lactis subsp. cremoris KW2

45.714

95.672

0.437
  comFA Latilactobacillus sakei subsp. sakei 23K

37.844

99.317

0.376

Multiple sequence alignment