Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ABWV75_RS08890 Genome accession   NZ_AP031487
Coordinates   1762921..1763505 (+) Length   194 a.a.
NCBI ID   WP_002448199.1    Uniprot ID   A0A974QMC2
Organism   Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1757921..1768505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV75_RS08860 (SKB0068_17230) - 1758782..1760149 (-) 1368 WP_071860039.1 isochorismate synthase -
  ABWV75_RS08865 (SKB0068_17240) - 1760330..1761268 (+) 939 WP_353317853.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ABWV75_RS08870 (SKB0068_17250) - 1761313..1761867 (-) 555 WP_217877672.1 GNAT family N-acetyltransferase -
  ABWV75_RS08875 (SKB0068_17260) - 1762011..1762223 (+) 213 WP_107623416.1 TM2 domain-containing protein -
  ABWV75_RS08880 - 1762313..1762411 (+) 99 WP_017175792.1 SAR1012 family small protein -
  ABWV75_RS08885 (SKB0068_17270) - 1762495..1762713 (-) 219 WP_002448162.1 IDEAL domain-containing protein -
  ABWV75_RS08890 (SKB0068_17280) comK/comK1 1762921..1763505 (+) 585 WP_002448199.1 competence protein ComK Regulator
  ABWV75_RS08905 (SKB0068_17290) - 1763908..1764897 (-) 990 WP_353317857.1 lipoate--protein ligase -
  ABWV75_RS08910 (SKB0068_17300) - 1765086..1765262 (+) 177 WP_002448045.1 DUF2187 family protein -
  ABWV75_RS08915 (SKB0068_17310) - 1765278..1765880 (+) 603 WP_002448227.1 CPBP family glutamic-type intramembrane protease -
  ABWV75_RS08920 (SKB0068_17320) - 1766044..1767402 (-) 1359 WP_002488327.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22940.27 Da        Isoelectric Point: 9.6668

>NTDB_id=109754 ABWV75_RS08890 WP_002448199.1 1762921..1763505(+) (comK/comK1) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MTQFNKPPNTIYVIRKGDMVIRPTFDNHQQPNGSEILKFDTSREISPFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIIFANQEALTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=109754 ABWV75_RS08890 WP_002448199.1 1762921..1763505(+) (comK/comK1) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
ATGACTCAGTTCAATAAACCACCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACATTTGACAA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGCCCTTTTAAAACTCAAAAAATTA
TTGAACGATCATGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATCGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTACATTTCTGATATTAAGCCATTAAAGAACAGAAAGAGTAAAATTATCTTTGCAAACCAAGAAGCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAGTCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATTTTTGAGGCCCTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

73.913

94.845

0.701
  comK/comK1 Staphylococcus aureus N315

73.913

94.845

0.701

Multiple sequence alignment