Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ABWV75_RS06420 | Genome accession | NZ_AP031487 |
| Coordinates | 1254801..1255775 (+) | Length | 324 a.a. |
| NCBI ID | WP_002449861.1 | Uniprot ID | - |
| Organism | Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1249801..1260775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWV75_RS06385 (SKB0068_12250) | rpmG | 1250262..1250411 (+) | 150 | WP_002449881.1 | 50S ribosomal protein L33 | - |
| ABWV75_RS06390 (SKB0068_12260) | - | 1250621..1251172 (+) | 552 | WP_064206831.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ABWV75_RS06395 (SKB0068_12270) | - | 1251172..1252629 (+) | 1458 | WP_353317516.1 | rhomboid family intramembrane serine protease | - |
| ABWV75_RS06400 (SKB0068_12280) | - | 1252613..1252816 (+) | 204 | WP_037555982.1 | YqgQ family protein | - |
| ABWV75_RS06405 (SKB0068_12290) | - | 1252813..1253799 (+) | 987 | WP_002449785.1 | ROK family glucokinase | - |
| ABWV75_RS06410 (SKB0068_12300) | - | 1253799..1254122 (+) | 324 | WP_002449910.1 | MTH1187 family thiamine-binding protein | - |
| ABWV75_RS06415 (SKB0068_12310) | - | 1254124..1254750 (+) | 627 | WP_002449717.1 | MBL fold metallo-hydrolase | - |
| ABWV75_RS06420 (SKB0068_12320) | comGA | 1254801..1255775 (+) | 975 | WP_002449861.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABWV75_RS06425 (SKB0068_12330) | comGB | 1255753..1256811 (+) | 1059 | WP_353318791.1 | competence type IV pilus assembly protein ComGB | - |
| ABWV75_RS06430 (SKB0068_12340) | comGC | 1256830..1257141 (+) | 312 | WP_115344919.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABWV75_RS06435 (SKB0068_12350) | comGD | 1257131..1257565 (+) | 435 | WP_353317518.1 | competence type IV pilus minor pilin ComGD | - |
| ABWV75_RS06440 (SKB0068_12370) | - | 1257757..1258254 (+) | 498 | WP_002449908.1 | competence protein ComG | - |
| ABWV75_RS06445 (SKB0068_12390) | - | 1258419..1258928 (+) | 510 | WP_002449809.1 | shikimate kinase | - |
| ABWV75_RS06450 (SKB0068_12400) | gcvT | 1259121..1260212 (+) | 1092 | WP_002488553.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36955.92 Da Isoelectric Point: 8.2269
>NTDB_id=109747 ABWV75_RS06420 WP_002449861.1 1254801..1255775(+) (comGA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MKLLFQEIINKAISKNASDVHFIPSEDKVHIKFRVNDRLETYEIFSNDIYEKLLIYMKFKANLDVSTHQVAQSGRYTYHA
KSIFYLRISTLPLSLGIESCVIRLIPQYFTSKREYKDFNDFKPLMNKKQGLILLTGPTGSGKSTLMYQLVLYAFQELNLN
VITIENPVEQLLKGITQVSVNHKAGIDYVNSFKAILRCDPDVILIGEIRDAEVAKCVIQASLSGHLVLTTMHSSNCKGAI
LRLLEMGISVQEISQAINVISNQRLVTTTLNQRKLVCESITNNQIQYFFEHNHTLPETFNNLKEKLLSLSKEGLICEDVV
EKYI
MKLLFQEIINKAISKNASDVHFIPSEDKVHIKFRVNDRLETYEIFSNDIYEKLLIYMKFKANLDVSTHQVAQSGRYTYHA
KSIFYLRISTLPLSLGIESCVIRLIPQYFTSKREYKDFNDFKPLMNKKQGLILLTGPTGSGKSTLMYQLVLYAFQELNLN
VITIENPVEQLLKGITQVSVNHKAGIDYVNSFKAILRCDPDVILIGEIRDAEVAKCVIQASLSGHLVLTTMHSSNCKGAI
LRLLEMGISVQEISQAINVISNQRLVTTTLNQRKLVCESITNNQIQYFFEHNHTLPETFNNLKEKLLSLSKEGLICEDVV
EKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=109747 ABWV75_RS06420 WP_002449861.1 1254801..1255775(+) (comGA) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
TTGAAATTATTATTTCAAGAAATAATTAATAAAGCAATTTCAAAAAATGCAAGTGACGTACACTTTATTCCTTCAGAGGA
TAAAGTACATATTAAATTCAGAGTGAATGATAGGTTAGAGACGTATGAAATATTTAGTAATGACATTTATGAAAAATTAT
TAATTTATATGAAATTTAAAGCAAATTTAGATGTATCAACACATCAAGTAGCTCAAAGTGGTAGATATACTTATCATGCT
AAATCAATATTTTATTTAAGAATTTCTACTTTACCTTTGTCATTAGGAATAGAAAGTTGTGTTATCAGACTTATCCCTCA
ATATTTCACTTCTAAAAGAGAGTATAAAGACTTTAATGACTTTAAACCTCTAATGAATAAAAAGCAAGGTCTCATTTTAC
TTACTGGTCCAACAGGTTCAGGTAAAAGTACTTTGATGTATCAATTAGTACTCTATGCTTTTCAAGAATTAAATTTAAAT
GTTATTACAATAGAAAATCCTGTTGAACAATTATTAAAAGGCATAACACAAGTGTCAGTAAATCATAAAGCTGGTATAGA
TTATGTTAATTCATTTAAAGCAATATTAAGATGTGATCCAGATGTTATTTTAATTGGTGAAATTAGAGATGCTGAAGTGG
CAAAATGTGTTATTCAAGCAAGTTTAAGTGGTCATTTAGTGCTAACCACTATGCATTCAAGCAATTGTAAGGGCGCAATA
CTCAGATTGTTAGAGATGGGGATTAGTGTTCAAGAAATTTCACAAGCAATAAATGTCATTTCAAATCAAAGATTAGTTAC
AACTACTTTAAATCAAAGAAAGCTTGTTTGTGAGTCTATTACAAATAATCAAATTCAATATTTTTTTGAACATAACCATA
CGCTTCCTGAGACATTTAATAATTTAAAAGAAAAATTGTTATCGCTATCGAAAGAAGGTCTTATATGTGAAGATGTGGTT
GAAAAATATATTTAA
TTGAAATTATTATTTCAAGAAATAATTAATAAAGCAATTTCAAAAAATGCAAGTGACGTACACTTTATTCCTTCAGAGGA
TAAAGTACATATTAAATTCAGAGTGAATGATAGGTTAGAGACGTATGAAATATTTAGTAATGACATTTATGAAAAATTAT
TAATTTATATGAAATTTAAAGCAAATTTAGATGTATCAACACATCAAGTAGCTCAAAGTGGTAGATATACTTATCATGCT
AAATCAATATTTTATTTAAGAATTTCTACTTTACCTTTGTCATTAGGAATAGAAAGTTGTGTTATCAGACTTATCCCTCA
ATATTTCACTTCTAAAAGAGAGTATAAAGACTTTAATGACTTTAAACCTCTAATGAATAAAAAGCAAGGTCTCATTTTAC
TTACTGGTCCAACAGGTTCAGGTAAAAGTACTTTGATGTATCAATTAGTACTCTATGCTTTTCAAGAATTAAATTTAAAT
GTTATTACAATAGAAAATCCTGTTGAACAATTATTAAAAGGCATAACACAAGTGTCAGTAAATCATAAAGCTGGTATAGA
TTATGTTAATTCATTTAAAGCAATATTAAGATGTGATCCAGATGTTATTTTAATTGGTGAAATTAGAGATGCTGAAGTGG
CAAAATGTGTTATTCAAGCAAGTTTAAGTGGTCATTTAGTGCTAACCACTATGCATTCAAGCAATTGTAAGGGCGCAATA
CTCAGATTGTTAGAGATGGGGATTAGTGTTCAAGAAATTTCACAAGCAATAAATGTCATTTCAAATCAAAGATTAGTTAC
AACTACTTTAAATCAAAGAAAGCTTGTTTGTGAGTCTATTACAAATAATCAAATTCAATATTTTTTTGAACATAACCATA
CGCTTCCTGAGACATTTAATAATTTAAAAGAAAAATTGTTATCGCTATCGAAAGAAGGTCTTATATGTGAAGATGTGGTT
GAAAAATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
69.753 |
100 |
0.698 |
| comGA | Staphylococcus aureus N315 |
69.753 |
100 |
0.698 |