Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACM0O0_RS02015 Genome accession   NZ_CP180689
Coordinates   417919..418548 (-) Length   209 a.a.
NCBI ID   WP_239956786.1    Uniprot ID   -
Organism   Acinetobacter lactucae isolate nanjing     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412919..423548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0O0_RS01980 mlaE 413249..414025 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACM0O0_RS01985 - 414025..414708 (+) 684 WP_416040997.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACM0O0_RS01990 - 414735..415376 (+) 642 WP_031949443.1 phospholipid-binding protein MlaC -
  ACM0O0_RS01995 - 415388..415675 (+) 288 WP_061876000.1 lipid asymmetry maintenance protein MlaB -
  ACM0O0_RS02000 - 415748..416761 (-) 1014 WP_031949440.1 magnesium and cobalt transport protein CorA -
  ACM0O0_RS02005 - 416920..417501 (+) 582 WP_016143577.1 TIGR00730 family Rossman fold protein -
  ACM0O0_RS02010 - 417516..417917 (+) 402 WP_416040998.1 NUDIX hydrolase -
  ACM0O0_RS02015 comF 417919..418548 (-) 630 WP_239956786.1 ComF family protein Machinery gene
  ACM0O0_RS02020 recG 418541..420586 (-) 2046 WP_062850174.1 ATP-dependent DNA helicase RecG -
  ACM0O0_RS02025 - 420607..421422 (+) 816 WP_416040999.1 NAD-dependent epimerase/dehydratase family protein -
  ACM0O0_RS02030 - 421502..422485 (+) 984 WP_082183846.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24493.66 Da        Isoelectric Point: 9.8206

>NTDB_id=1097455 ACM0O0_RS02015 WP_239956786.1 417919..418548(-) (comF) [Acinetobacter lactucae isolate nanjing]
MFSFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1097455 ACM0O0_RS02015 WP_239956786.1 417919..418548(-) (comF) [Acinetobacter lactucae isolate nanjing]
ATGTTTAGTTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATATTCACTTTGTAAAGACTGTTGGGAACAGCTGCCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTGACTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAGTCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATTC
AACGCTTAAATGAGCACTCTCAAAAAGGGCTTACTCGACTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACTACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828

Multiple sequence alignment