Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABWV75_RS04230 | Genome accession | NZ_AP031487 |
| Coordinates | 836049..836444 (+) | Length | 131 a.a. |
| NCBI ID | WP_142805761.1 | Uniprot ID | - |
| Organism | Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 831049..841444
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABWV75_RS04200 (SKB0068_08290) | atpD | 831154..832566 (+) | 1413 | WP_071860166.1 | F0F1 ATP synthase subunit beta | - |
| ABWV75_RS04205 (SKB0068_08300) | - | 832588..832989 (+) | 402 | WP_002448708.1 | F0F1 ATP synthase subunit epsilon | - |
| ABWV75_RS04210 (SKB0068_08310) | - | 833298..833528 (+) | 231 | WP_002448711.1 | DUF1146 family protein | - |
| ABWV75_RS04215 (SKB0068_08320) | murA | 833635..834900 (+) | 1266 | WP_353318710.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ABWV75_RS04220 (SKB0068_08330) | fabZ | 834928..835365 (+) | 438 | WP_002448673.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ABWV75_RS04225 (SKB0068_08340) | - | 835415..835855 (-) | 441 | WP_353318711.1 | YwpF-like family protein | - |
| ABWV75_RS04230 (SKB0068_08350) | ssb | 836049..836444 (+) | 396 | WP_142805761.1 | single-stranded DNA-binding protein | Machinery gene |
| ABWV75_RS04235 (SKB0068_08360) | - | 836850..837614 (+) | 765 | WP_353318712.1 | transglycosylase family protein | - |
| ABWV75_RS04240 (SKB0068_08370) | tenA | 838006..838695 (+) | 690 | WP_019835613.1 | thiaminase II | - |
| ABWV75_RS04245 (SKB0068_08380) | thiD | 838688..839509 (+) | 822 | WP_002455065.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ABWV75_RS04250 (SKB0068_08390) | thiM | 839502..840290 (+) | 789 | WP_353318713.1 | hydroxyethylthiazole kinase | - |
| ABWV75_RS04255 (SKB0068_08400) | thiE | 840293..840931 (+) | 639 | WP_048787784.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15136.32 Da Isoelectric Point: 7.1326
>NTDB_id=109735 ABWV75_RS04230 WP_142805761.1 836049..836444(+) (ssb) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEIACDYILCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDHLELMNIK
MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEIACDYILCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDHLELMNIK
Nucleotide
Download Length: 396 bp
>NTDB_id=109735 ABWV75_RS04230 WP_142805761.1 836049..836444(+) (ssb) [Staphylococcus hominis subsp. novobiosepticus strain NBRC 113928]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATAATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGACTATATATTGTGTAAAGCATTTG
GTAAGATGGCCAGTAACATTGAAAAATATACTTCTCAAGGATCATTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTAACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATCATCTCGAATTAATGAATATAAAATAA
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATAATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGACTATATATTGTGTAAAGCATTTG
GTAAGATGGCCAGTAACATTGAAAAATATACTTCTCAAGGATCATTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTAACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATCATCTCGAATTAATGAATATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
74.046 |
100 |
0.74 |
| ssb | Staphylococcus aureus MW2 |
73.282 |
100 |
0.733 |