Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACM28P_RS07940 | Genome accession | NZ_CP180627 |
| Coordinates | 1573757..1574275 (+) | Length | 172 a.a. |
| NCBI ID | WP_013085589.1 | Uniprot ID | A0A109DE21 |
| Organism | Lactobacillus crispatus strain T31e | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1568757..1579275
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACM28P_RS07930 (ACM28P_07930) | gyrA | 1570713..1573193 (+) | 2481 | WP_013085588.1 | DNA gyrase subunit A | - |
| ACM28P_RS07935 (ACM28P_07935) | rpsF | 1573411..1573707 (+) | 297 | WP_005729269.1 | 30S ribosomal protein S6 | - |
| ACM28P_RS07940 (ACM28P_07940) | ssb | 1573757..1574275 (+) | 519 | WP_013085589.1 | single-stranded DNA-binding protein | Machinery gene |
| ACM28P_RS07945 (ACM28P_07945) | rpsR | 1574303..1574539 (+) | 237 | WP_003549366.1 | 30S ribosomal protein S18 | - |
| ACM28P_RS07950 (ACM28P_07950) | - | 1574598..1575068 (-) | 471 | WP_013085590.1 | hypothetical protein | - |
| ACM28P_RS07955 (ACM28P_07955) | - | 1575052..1575405 (-) | 354 | WP_035442818.1 | helix-turn-helix domain-containing protein | - |
| ACM28P_RS07960 (ACM28P_07960) | - | 1575739..1576056 (+) | 318 | WP_023487822.1 | hypothetical protein | - |
| ACM28P_RS07965 (ACM28P_07965) | - | 1576095..1577093 (+) | 999 | WP_023487823.1 | helveticin J family class III bacteriocin | - |
| ACM28P_RS07970 (ACM28P_07970) | - | 1577234..1578349 (+) | 1116 | WP_416038103.1 | SLAP domain-containing protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18649.18 Da Isoelectric Point: 4.7317
>NTDB_id=1097087 ACM28P_RS07940 WP_013085589.1 1573757..1574275(+) (ssb) [Lactobacillus crispatus strain T31e]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1097087 ACM28P_RS07940 WP_013085589.1 1573757..1574275(+) (ssb) [Lactobacillus crispatus strain T31e]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.571 |
100 |
0.616 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.273 |
100 |
0.535 |