Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   ABWV32_RS08785 Genome accession   NZ_AP031467
Coordinates   1784345..1784920 (-) Length   191 a.a.
NCBI ID   WP_049389109.1    Uniprot ID   -
Organism   Staphylococcus capitis strain NBRC 115779     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779345..1789920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWV32_RS08750 (SKB0123_17400) - 1780137..1780274 (-) 138 WP_016898795.1 gallidermin family lantibiotic -
  ABWV32_RS08755 (SKB0123_17420) - 1781683..1782353 (+) 671 Protein_1690 Ltp family lipoprotein -
  ABWV32_RS08760 - 1783036..1783137 (+) 102 Protein_1691 hypothetical protein -
  ABWV32_RS08765 - 1783198..1783311 (+) 114 Protein_1692 Ltp family lipoprotein -
  ABWV32_RS08770 - 1783342..1783482 (+) 141 Protein_1693 Ltp family lipoprotein -
  ABWV32_RS08785 (SKB0123_17440) comK/comK1 1784345..1784920 (-) 576 WP_049389109.1 competence protein ComK Regulator
  ABWV32_RS08790 (SKB0123_17450) - 1785139..1785357 (+) 219 WP_002452896.1 IDEAL domain-containing protein -
  ABWV32_RS08795 (SKB0123_17460) - 1785437..1786423 (-) 987 WP_353304778.1 lipoate--protein ligase -
  ABWV32_RS08800 (SKB0123_17470) - 1786628..1786813 (+) 186 WP_002433441.1 DUF2187 family protein -
  ABWV32_RS08805 (SKB0123_17480) - 1786819..1787421 (+) 603 WP_353304779.1 CPBP family glutamic-type intramembrane protease -
  ABWV32_RS08810 (SKB0123_17490) - 1787517..1789025 (-) 1509 WP_002452892.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22741.86 Da        Isoelectric Point: 9.5768

>NTDB_id=109687 ABWV32_RS08785 WP_049389109.1 1784345..1784920(-) (comK/comK1) [Staphylococcus capitis strain NBRC 115779]
MTNFSESIYVIRKGDMLIRPRYDEYQQTSGAEIIRFDKSRKESPFKVQRIIERSCKFYGNSYLSKKSETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQDENIWINMHYIDSIKELKNRKSKVIFANSESFILNVSYHSLWHQYTNAIIYYYMVDKHARM
KSNNPEQLIDYNQSSLNIFEALSRYSLLDDK

Nucleotide


Download         Length: 576 bp        

>NTDB_id=109687 ABWV32_RS08785 WP_049389109.1 1784345..1784920(-) (comK/comK1) [Staphylococcus capitis strain NBRC 115779]
ATGACTAATTTTAGTGAATCAATCTATGTTATTAGAAAAGGTGATATGTTAATTCGACCAAGGTATGATGAATATCAACA
AACTTCAGGGGCAGAAATTATAAGATTTGATAAATCACGAAAGGAAAGTCCATTTAAAGTACAAAGAATTATTGAAAGGT
CCTGCAAATTTTATGGTAATAGCTATCTAAGTAAAAAATCTGAAACTAATAGAATTACAGGTATCTCTAGTAAACCACCT
ATTTTACTTACTCCATTATTTCCAACTTATTTTTTCCCAACACATTCTGATCGTCAAGATGAAAACATCTGGATAAACAT
GCATTATATTGATAGCATCAAAGAACTAAAAAATCGTAAAAGTAAAGTGATATTTGCTAATAGTGAATCATTTATATTAA
ACGTTTCTTATCATAGCTTATGGCATCAATATACGAACGCGATTATTTATTATTATATGGTAGATAAACATGCACGTATG
AAATCAAATAACCCAGAACAACTCATTGATTATAACCAATCATCGTTAAATATATTTGAAGCTCTTTCAAGGTATTCACT
TTTAGATGATAAGTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(8-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.064

98.429

0.749
  comK/comK1 Staphylococcus aureus N315

76.064

98.429

0.749

Multiple sequence alignment