Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACM0CY_RS02205 Genome accession   NZ_CP180570
Coordinates   462454..463329 (-) Length   291 a.a.
NCBI ID   WP_201901778.1    Uniprot ID   -
Organism   Aeromonas caviae strain BJ093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457454..468329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0CY_RS02180 - 459201..460385 (+) 1185 WP_415870559.1 tetratricopeptide repeat protein -
  ACM0CY_RS02185 mutT 460394..460798 (+) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  ACM0CY_RS02190 yacG 460856..461050 (-) 195 WP_039040499.1 DNA gyrase inhibitor YacG -
  ACM0CY_RS02195 zapD 461061..461783 (-) 723 WP_010675825.1 cell division protein ZapD -
  ACM0CY_RS02200 coaE 461821..462435 (-) 615 WP_042864857.1 dephospho-CoA kinase -
  ACM0CY_RS02205 pilD 462454..463329 (-) 876 WP_201901778.1 prepilin peptidase Machinery gene
  ACM0CY_RS02210 pilC 463406..464647 (-) 1242 WP_010675822.1 type II secretion system F family protein Machinery gene
  ACM0CY_RS02215 pilB 464775..466481 (-) 1707 WP_041213997.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ACM0CY_RS02220 tapA 466485..466928 (-) 444 WP_161653069.1 type IVa pilus major pilin TapA -
  ACM0CY_RS02225 nadC 467239..468102 (-) 864 WP_041213995.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 31954.12 Da        Isoelectric Point: 7.0808

>NTDB_id=1096690 ACM0CY_RS02205 WP_201901778.1 462454..463329(-) (pilD) [Aeromonas caviae strain BJ093]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEATPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLCLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVIGTMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1096690 ACM0CY_RS02205 WP_201901778.1 462454..463329(-) (pilD) [Aeromonas caviae strain BJ093]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTTATCCATCGTCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGCGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCCCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGCCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCCCGCTATCCCCTGGTCGAACTGCTCACCGCCTTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGAT
CGGTACCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTTTCCTCG
CTGGCAGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAATCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.189

98.282

0.601
  pilD Vibrio campbellii strain DS40M4

56.897

99.656

0.567
  pilD Acinetobacter baumannii D1279779

52.33

95.876

0.502
  pilD Acinetobacter nosocomialis M2

52.33

95.876

0.502
  pilD Neisseria gonorrhoeae MS11

51.341

89.691

0.46

Multiple sequence alignment