Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACM0CW_RS18695 Genome accession   NZ_CP180569
Coordinates   4018050..4018925 (+) Length   291 a.a.
NCBI ID   WP_201921354.1    Uniprot ID   -
Organism   Aeromonas caviae strain BJ042     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4013050..4023925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM0CW_RS18675 nadC 4013280..4014143 (+) 864 WP_042864860.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACM0CW_RS18680 - 4014454..4014897 (+) 444 WP_080988740.1 pilin -
  ACM0CW_RS18685 pilB 4014897..4016603 (+) 1707 WP_041213997.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ACM0CW_RS18690 pilC 4016731..4017972 (+) 1242 WP_216944752.1 type II secretion system F family protein Machinery gene
  ACM0CW_RS18695 pilD 4018050..4018925 (+) 876 WP_201921354.1 prepilin peptidase Machinery gene
  ACM0CW_RS18700 coaE 4018944..4019558 (+) 615 WP_201921352.1 dephospho-CoA kinase -
  ACM0CW_RS18705 zapD 4019596..4020318 (+) 723 WP_010675825.1 cell division protein ZapD -
  ACM0CW_RS18710 yacG 4020329..4020523 (+) 195 WP_039040499.1 DNA gyrase inhibitor YacG -
  ACM0CW_RS18715 mutT 4020579..4020983 (-) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  ACM0CW_RS18720 - 4020992..4022176 (-) 1185 WP_216944753.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32027.12 Da        Isoelectric Point: 6.8280

>NTDB_id=1096682 ACM0CW_RS18695 WP_201921354.1 4018050..4018925(+) (pilD) [Aeromonas caviae strain BJ042]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHASISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1096682 ACM0CW_RS18695 WP_201921354.1 4018050..4018925(+) (pilD) [Aeromonas caviae strain BJ042]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTACTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCTCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTTTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCGGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ATGGCGACTTCAAACTGCTGGCGGCACTGGGCGCCTGGCTGGGATGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCTTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.069

98.969

0.594
  pilD Vibrio campbellii strain DS40M4

56.552

99.656

0.564
  pilD Acinetobacter baumannii D1279779

51.613

95.876

0.495
  pilD Acinetobacter nosocomialis M2

51.613

95.876

0.495
  pilD Neisseria gonorrhoeae MS11

51.341

89.691

0.46

Multiple sequence alignment