Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACMXYT_RS03550 Genome accession   NZ_CP180552
Coordinates   804990..805892 (-) Length   300 a.a.
NCBI ID   WP_415911856.1    Uniprot ID   -
Organism   Neptuniibacter sp. QD37_11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 799990..810892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMXYT_RS03530 (ACMXYT_03530) argJ 802000..803220 (+) 1221 WP_415911854.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACMXYT_RS03535 (ACMXYT_03535) - 803220..804179 (+) 960 WP_415900237.1 Nudix family hydrolase -
  ACMXYT_RS03540 (ACMXYT_03540) - 804157..804384 (-) 228 WP_415883654.1 DNA gyrase inhibitor YacG -
  ACMXYT_RS03545 (ACMXYT_03545) coaE 804381..804986 (-) 606 WP_415911855.1 dephospho-CoA kinase -
  ACMXYT_RS03550 (ACMXYT_03550) pilD 804990..805892 (-) 903 WP_415911856.1 prepilin peptidase Machinery gene
  ACMXYT_RS03555 (ACMXYT_03555) pilC 806062..807282 (-) 1221 WP_415900242.1 type II secretion system F family protein Machinery gene
  ACMXYT_RS03560 (ACMXYT_03560) pilB 807299..809014 (-) 1716 WP_415900244.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACMXYT_RS03565 (ACMXYT_03565) - 809263..809688 (+) 426 WP_415900246.1 pilin -
  ACMXYT_RS03570 (ACMXYT_03570) - 809761..810102 (+) 342 WP_415900247.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33918.06 Da        Isoelectric Point: 4.7734

>NTDB_id=1096509 ACMXYT_RS03550 WP_415911856.1 804990..805892(-) (pilD) [Neptuniibacter sp. QD37_11]
MIPIINDPALAIACAFLFSLCVGSFLNVVIHRLPIMMTREWEKEIFCYLKEQEAKQQQEEQEEQEEQEEQEEIYNLSVPA
STCPKCAHRIRWYENIPVISWIFLGARCSSCGLPIPFRYPFVELFTAICSAYAVYVFGFNLIGLSVVVLTWVLVCLIFID
IDHQLLPDRLTLPLLWLGLFVNSFGLFSSLEHAVYGAMAGYLSLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWAGVYQL
PLIILLSSLVGAIIGIAMMLFKNHSPQNPIPFGPYLSIAGWIALIWGDTLTTLYLQLIRI

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1096509 ACMXYT_RS03550 WP_415911856.1 804990..805892(-) (pilD) [Neptuniibacter sp. QD37_11]
ATGATTCCAATTATTAATGACCCCGCGCTGGCTATCGCTTGCGCGTTTTTGTTTTCTCTTTGTGTCGGTAGTTTTTTAAA
CGTAGTCATACATCGTTTACCTATTATGATGACTCGAGAATGGGAGAAAGAAATTTTTTGCTACCTGAAGGAACAGGAAG
CTAAGCAACAGCAGGAAGAGCAGGAAGAGCAGGAAGAGCAGGAAGAGCAGGAAGAAATCTATAATCTTTCCGTTCCCGCA
TCTACCTGCCCCAAATGCGCACACAGAATCAGATGGTATGAAAACATACCGGTTATTAGCTGGATATTCCTTGGCGCTAG
ATGCTCTTCATGCGGGTTACCGATACCTTTCAGATACCCTTTTGTAGAATTATTTACAGCTATTTGCTCCGCTTATGCAG
TTTACGTTTTTGGCTTTAACCTGATTGGATTAAGCGTAGTAGTACTTACATGGGTACTGGTATGCCTGATTTTTATAGAT
ATTGATCATCAACTACTTCCCGACCGTTTAACTCTACCTTTGCTATGGCTGGGTTTATTCGTCAACAGTTTTGGCCTTTT
CAGTTCACTAGAACACGCTGTCTATGGTGCAATGGCAGGTTACCTAAGCTTATGGTCAATCTACTGGGCATTTAAACTGC
TAACAGGCAAAGAAGGTATGGGATACGGAGATTTCAAACTACTCGCAGCCCTTGGAGCCTGGGCTGGAGTCTATCAATTG
CCACTAATTATTCTATTAAGCTCATTAGTCGGTGCGATAATTGGTATAGCTATGATGCTGTTTAAAAACCATTCACCTCA
AAACCCTATTCCATTTGGCCCATATCTCTCAATTGCAGGATGGATAGCACTGATCTGGGGCGACACTCTGACAACACTCT
ACCTTCAACTAATAAGAATCTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(148-256)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

51.712

97.333

0.503
  pilD Acinetobacter nosocomialis M2

51.712

97.333

0.503
  pilD Vibrio cholerae strain A1552

51.557

96.333

0.497
  pilD Vibrio campbellii strain DS40M4

49.315

97.333

0.48
  pilD Neisseria gonorrhoeae MS11

43.214

93.333

0.403

Multiple sequence alignment