Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACMZ68_RS16025 Genome accession   NZ_CP180522
Coordinates   3358714..3359343 (+) Length   209 a.a.
NCBI ID   WP_415871416.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP5091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3353714..3364343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMZ68_RS16010 (ACMZ68_16010) - 3354777..3355760 (-) 984 WP_033849231.1 putative solute-binding protein -
  ACMZ68_RS16015 (ACMZ68_16015) - 3355840..3356655 (-) 816 WP_284086199.1 NAD-dependent epimerase/dehydratase family protein -
  ACMZ68_RS16020 (ACMZ68_16020) recG 3356676..3358721 (+) 2046 WP_415871415.1 ATP-dependent DNA helicase RecG -
  ACMZ68_RS16025 (ACMZ68_16025) comF 3358714..3359343 (+) 630 WP_415871416.1 ComF family protein Machinery gene
  ACMZ68_RS16030 (ACMZ68_16030) mutT 3359345..3359746 (-) 402 WP_002116701.1 NUDIX hydrolase -
  ACMZ68_RS16035 (ACMZ68_16035) - 3359761..3360342 (-) 582 WP_032036713.1 TIGR00730 family Rossman fold protein -
  ACMZ68_RS16040 (ACMZ68_16040) - 3360501..3361514 (+) 1014 WP_002116978.1 magnesium and cobalt transport protein CorA -
  ACMZ68_RS16045 (ACMZ68_16045) - 3361587..3361874 (-) 288 WP_032036711.1 lipid asymmetry maintenance protein MlaB -
  ACMZ68_RS16050 (ACMZ68_16050) - 3361886..3362527 (-) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  ACMZ68_RS16055 (ACMZ68_16055) - 3362554..3363234 (-) 681 WP_032036709.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACMZ68_RS16060 (ACMZ68_16060) mlaE 3363234..3364010 (-) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24446.67 Da        Isoelectric Point: 9.9656

>NTDB_id=1096196 ACMZ68_RS16025 WP_415871416.1 3358714..3359343(+) (comF) [Acinetobacter pittii strain AP5091]
MFNFLNFQPLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNLSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCISIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1096196 ACMZ68_RS16025 WP_415871416.1 3358714..3359343(+) (comF) [Acinetobacter pittii strain AP5091]
ATGTTTAATTTTTTAAACTTCCAACCTCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACCATTCAACGTAATAATCTATCTGTTCTTG
TGGCCTGTAATTATGCTTATCCGGTTAACCGGATCATTCAACAGTTTAAATATGAACAAAAGTTACATTATCAGATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCGATCGTACCTATGCCCATTTCCAATCAACGTTTAAT
CGAGCGTGGTTTCAATCAATCATTACTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCCCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACGGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCATATCCATTCATACGGCGTGCCTAGCAGCAACGCCCAAGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.254

100

0.833
  comF Acinetobacter baumannii D1279779

82.297

100

0.823

Multiple sequence alignment