Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACMYQ0_RS04560 Genome accession   NZ_CP180477
Coordinates   961034..961666 (+) Length   210 a.a.
NCBI ID   WP_136666066.1    Uniprot ID   -
Organism   Pseudomonas leptonychotis strain CCM 8849     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 956034..966666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMYQ0_RS04540 lolD 956092..956775 (+) 684 WP_415755881.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACMYQ0_RS04545 - 956775..958019 (+) 1245 WP_136666069.1 lipoprotein-releasing ABC transporter permease subunit -
  ACMYQ0_RS04550 - 958071..958604 (-) 534 WP_136666068.1 DUF2062 domain-containing protein -
  ACMYQ0_RS04555 comA 958739..960961 (+) 2223 WP_415755023.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACMYQ0_RS04560 exbB 961034..961666 (+) 633 WP_136666066.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACMYQ0_RS04565 - 961663..962091 (+) 429 WP_136666064.1 ExbD/TolR family protein -
  ACMYQ0_RS04570 lpxK 962105..963106 (+) 1002 WP_415755024.1 tetraacyldisaccharide 4'-kinase -
  ACMYQ0_RS04575 - 963168..963353 (+) 186 WP_405120604.1 Trm112 family protein -
  ACMYQ0_RS04580 kdsB 963354..964118 (+) 765 WP_415755025.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACMYQ0_RS04585 - 964118..964582 (+) 465 WP_415755026.1 low molecular weight protein-tyrosine-phosphatase -
  ACMYQ0_RS04590 murB 964579..965598 (+) 1020 WP_415755027.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22881.12 Da        Isoelectric Point: 9.1188

>NTDB_id=1095972 ACMYQ0_RS04560 WP_136666066.1 961034..961666(+) (exbB) [Pseudomonas leptonychotis strain CCM 8849]
MWELVKAGGWMMLPIILCSIAAAGIIAERLWTLRPSRITPPNLLGQVWKWIKDKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAALLAGGISKALITTAA
GLMVAIPTLFFHRYLQRRVDELVVGMEQEAIRLVEVVQGDRDVDMGEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1095972 ACMYQ0_RS04560 WP_136666066.1 961034..961666(+) (exbB) [Pseudomonas leptonychotis strain CCM 8849]
GTGTGGGAACTGGTAAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTGTGTTCTATCGCTGCGGCCGGCATCATTGC
CGAACGCCTCTGGACGCTGCGGCCGAGCCGCATCACCCCACCCAACCTGCTGGGGCAGGTATGGAAGTGGATCAAAGATA
AAAAACTGAATAACCAGAAGCTCAAGGAGCTGCGCGCCAACTCGCCGTTGGGGCAGATTCTTGCCGCAGGGTTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTCAGGAGGCCGCCGCCCGGGTCATTCATGACCTAGAACGCTACCT
CAATGCCCTGGGCACTATCGCCGGTATTGCACCACTGCTGGGTTTGCTCGGCACTGTGCTGGGCATGATCGAGATTTTCA
GCTCCTTTATGGGCTCGGGCATGGCCAACGCAGCATTGCTGGCGGGCGGTATTTCCAAGGCGCTGATCACCACCGCAGCG
GGTTTGATGGTGGCTATTCCAACACTGTTCTTCCACCGTTACCTGCAGCGCCGGGTCGATGAGCTGGTTGTGGGCATGGA
GCAGGAAGCCATTCGCTTGGTAGAAGTGGTGCAGGGCGACCGTGATGTCGACATGGGCGAGGATAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

90

100

0.9

Multiple sequence alignment