Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACMX8W_RS17270 Genome accession   NZ_CP180439
Coordinates   3270832..3271476 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3265832..3276476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS17235 (ACMX8W_17235) mrpB 3267025..3267456 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ACMX8W_RS17240 (ACMX8W_17240) mrpC 3267456..3267797 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACMX8W_RS17245 (ACMX8W_17245) mrpD 3267790..3269271 (+) 1482 WP_174616586.1 Na+/H+ antiporter subunit D -
  ACMX8W_RS17250 (ACMX8W_17250) mrpE 3269277..3269753 (+) 477 WP_174616587.1 Na+/H+ antiporter subunit E -
  ACMX8W_RS17255 (ACMX8W_17255) mrpF 3269753..3270037 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACMX8W_RS17260 (ACMX8W_17260) mnhG 3270021..3270395 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  ACMX8W_RS17265 (ACMX8W_17265) yuxO 3270434..3270814 (-) 381 WP_174616601.1 hotdog fold thioesterase -
  ACMX8W_RS17270 (ACMX8W_17270) comA 3270832..3271476 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACMX8W_RS17275 (ACMX8W_17275) comP 3271557..3273857 (-) 2301 WP_415749590.1 histidine kinase Regulator
  ACMX8W_RS17280 (ACMX8W_17280) comX 3273869..3274033 (-) 165 WP_015384519.1 competence pheromone ComX -
  ACMX8W_RS17285 (ACMX8W_17285) - 3274046..3274906 (-) 861 WP_015483633.1 polyprenyl synthetase family protein -
  ACMX8W_RS17290 (ACMX8W_17290) degQ 3275091..3275231 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACMX8W_RS17295 (ACMX8W_17295) - 3275453..3275578 (+) 126 WP_154796978.1 hypothetical protein -
  ACMX8W_RS17300 (ACMX8W_17300) - 3275692..3276060 (+) 369 WP_015483634.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1095900 ACMX8W_RS17270 WP_003220716.1 3270832..3271476(-) (comA) [Bacillus subtilis strain Z-294]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1095900 ACMX8W_RS17270 WP_003220716.1 3270832..3271476(-) (comA) [Bacillus subtilis strain Z-294]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment