Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACMX77_RS19305 Genome accession   NZ_CP180438
Coordinates   3670871..3672262 (-) Length   463 a.a.
NCBI ID   WP_047183273.1    Uniprot ID   -
Organism   Bacillus subtilis strain W-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665871..3677262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX77_RS19270 (ACMX77_19270) flgL 3666042..3666938 (-) 897 WP_047183271.1 flagellar hook-associated protein FlgL -
  ACMX77_RS19275 (ACMX77_19275) flgK 3666949..3668472 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  ACMX77_RS19280 (ACMX77_19280) flgN 3668491..3668973 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ACMX77_RS19285 (ACMX77_19285) flgM 3668989..3669255 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACMX77_RS19290 (ACMX77_19290) yvyF 3669336..3669755 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACMX77_RS19295 (ACMX77_19295) comFC 3669829..3670551 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  ACMX77_RS19300 (ACMX77_19300) comFB 3670515..3670811 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACMX77_RS19305 (ACMX77_19305) comFA 3670871..3672262 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  ACMX77_RS19310 (ACMX77_19310) fakBA 3672368..3673213 (-) 846 WP_047183274.1 DegV family protein -
  ACMX77_RS19315 (ACMX77_19315) degU 3673311..3674000 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACMX77_RS19320 (ACMX77_19320) degS 3674083..3675240 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACMX77_RS19325 (ACMX77_19325) yvyE 3675457..3676110 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52499.52 Da        Isoelectric Point: 9.8740

>NTDB_id=1095827 ACMX77_RS19305 WP_047183273.1 3670871..3672262(-) (comFA) [Bacillus subtilis strain W-2]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1095827 ACMX77_RS19305 WP_047183273.1 3670871..3672262(-) (comFA) [Bacillus subtilis strain W-2]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAAAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987

Multiple sequence alignment