Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACLHDG_RS02910 Genome accession   NZ_CP180410
Coordinates   589256..591046 (-) Length   596 a.a.
NCBI ID   WP_415407493.1    Uniprot ID   -
Organism   Sulfurovum sp. CS9     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584256..596046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLHDG_RS02900 (ACLHDG_02895) - 587088..588515 (-) 1428 WP_415407491.1 hypothetical protein -
  ACLHDG_RS02905 (ACLHDG_02900) - 588534..588980 (-) 447 WP_415407492.1 PAS domain-containing protein -
  ACLHDG_RS02910 (ACLHDG_02905) uvrC 589256..591046 (-) 1791 WP_415407493.1 excinuclease ABC subunit UvrC Machinery gene
  ACLHDG_RS02915 (ACLHDG_02910) - 591034..591531 (-) 498 WP_415407494.1 hypothetical protein -
  ACLHDG_RS02920 (ACLHDG_02915) nadB 591601..593049 (+) 1449 WP_415407495.1 L-aspartate oxidase -
  ACLHDG_RS02925 (ACLHDG_02920) nhaD 593119..594465 (+) 1347 WP_415407496.1 sodium:proton antiporter NhaD -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 68563.81 Da        Isoelectric Point: 9.2120

>NTDB_id=1095747 ACLHDG_RS02910 WP_415407493.1 589256..591046(-) (uvrC) [Sulfurovum sp. CS9]
MQSVVQNLPSSAGVYQYFDITGKLLYVGKAKNLKNRVKSYWRSTPEFTPNPTQSPRIIKMLLEADKLEYIVVETEEDALI
LENSLIKQLKPKYNILLRDDKTYPYIYIDESQEYPRFEITRKVIKGKDITYYGPFPTGGKALLDALYEVYPLVQKKSCLR
EGKACLFYQIKKCLAPCEGKVTPEEYGEIVTQAKTSIVKRKKLINTLEEKMTSLAMQERYEEAGSMRDTIQAISSLTISS
NIDLANQMNLDIFAIQNGDERGVIVKLFMRDGKIISSAYSYFRHTHIFDENEAYKQALLEFYTIDTPNVSKQILTAQPFE
DSQQVAQTLSTRFDKKIEILTPQRGSKAKLIALAIQNCKELLRTKQSDTVMEQKIADLFDLTVIPYRIETFDNSHLMGVA
TVGGMVVWDEAKWDKSTYRRYTLHERDEYGQMKEMLSRRIADFKEHPAPDLWILDGGQANLNLALQLLKEENVNLDVIAI
AKEKLDAKAHRAKGAAKDLIYTVNGRIELKPNDKRLHWIQRQRDEAHRYAITYHQNKKRKEDTQVSLLNKKGIGKATVKK
LIDYFGTFEAIESASREDIERVTNKKISNIIKDNNP

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1095747 ACLHDG_RS02910 WP_415407493.1 589256..591046(-) (uvrC) [Sulfurovum sp. CS9]
ATGCAATCAGTAGTTCAAAACCTTCCCTCCTCTGCGGGAGTATACCAGTATTTTGATATTACAGGAAAGTTACTTTATGT
AGGAAAAGCAAAAAACCTTAAAAATCGTGTCAAAAGCTATTGGCGTTCTACACCGGAATTCACACCTAACCCTACACAGA
GTCCACGTATTATCAAGATGCTTCTTGAAGCAGATAAATTAGAATATATCGTCGTAGAAACTGAGGAAGATGCACTTATA
CTCGAAAACTCTCTCATCAAACAACTCAAGCCCAAATATAATATTTTACTGCGTGATGACAAAACCTATCCGTATATTTA
TATAGATGAGTCACAGGAATATCCTCGTTTTGAGATTACACGTAAAGTGATCAAAGGGAAAGATATCACATACTATGGTC
CTTTTCCTACAGGAGGGAAGGCTCTGCTTGATGCACTCTATGAAGTCTATCCACTGGTTCAAAAAAAGTCTTGTCTCAGA
GAGGGAAAAGCCTGTCTCTTTTACCAGATCAAAAAATGTTTAGCACCCTGTGAAGGGAAAGTCACACCTGAAGAGTATGG
AGAAATAGTCACTCAAGCAAAAACTTCCATAGTAAAACGTAAAAAGCTTATCAACACTTTGGAAGAGAAGATGACATCAC
TTGCGATGCAGGAACGTTATGAGGAAGCGGGCAGCATGAGAGATACCATTCAAGCCATCTCTTCACTCACGATCAGCTCC
AATATTGATCTGGCAAACCAAATGAACCTCGATATCTTTGCCATACAAAATGGAGACGAAAGAGGAGTCATCGTCAAACT
TTTTATGCGTGACGGAAAGATCATCTCTTCTGCCTACTCTTACTTCAGACACACCCATATCTTTGATGAAAATGAAGCCT
ATAAACAAGCTTTGTTAGAATTTTATACCATTGACACACCCAATGTGAGTAAACAGATCCTTACTGCCCAACCCTTTGAA
GACAGCCAACAAGTAGCCCAAACACTCAGCACACGTTTTGATAAAAAAATAGAAATCCTCACTCCACAGCGTGGCTCTAA
AGCTAAACTCATCGCTCTGGCAATACAAAACTGTAAGGAATTGTTACGTACAAAACAAAGTGATACAGTGATGGAGCAAA
AGATAGCAGACCTCTTTGATCTCACAGTCATTCCTTATCGCATTGAGACTTTTGACAATTCACACCTTATGGGTGTTGCC
ACAGTAGGAGGTATGGTCGTTTGGGATGAAGCCAAGTGGGATAAAAGCACCTATAGACGCTATACGCTGCACGAGCGAGA
TGAGTATGGGCAAATGAAAGAGATGCTCTCTCGCCGTATAGCAGACTTTAAAGAACATCCTGCACCAGACCTCTGGATAC
TCGATGGAGGTCAGGCAAACCTAAACCTCGCACTCCAACTTCTCAAAGAGGAAAATGTAAACCTTGATGTCATCGCCATA
GCCAAAGAGAAACTTGATGCCAAAGCCCATCGTGCCAAAGGTGCTGCGAAAGATCTCATTTACACTGTCAATGGACGCAT
AGAACTTAAGCCAAATGACAAACGTTTACACTGGATACAACGTCAAAGGGATGAAGCACATCGTTATGCTATCACTTACC
ATCAAAACAAAAAACGTAAAGAAGATACTCAGGTTTCTCTTCTCAATAAAAAGGGTATAGGTAAAGCTACTGTAAAAAAA
CTGATCGATTACTTTGGAACATTTGAAGCTATTGAAAGTGCTTCCAGAGAAGATATTGAGAGAGTTACAAATAAGAAAAT
TTCAAATATTATTAAAGATAATAATCCATAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(13-94)

UvrB/uvrC motif (UVR)

(201-234)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(377-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

49.492

98.993

0.49

Multiple sequence alignment