Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   ACLM45_RS09235 Genome accession   NZ_CP180406
Coordinates   1685220..1686878 (+) Length   552 a.a.
NCBI ID   WP_415408917.1    Uniprot ID   -
Organism   Synechococcus sp. A10-1-5-9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680220..1691878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLM45_RS09205 (ACLM45_09205) murB 1680811..1681743 (+) 933 WP_415408913.1 UDP-N-acetylmuramate dehydrogenase -
  ACLM45_RS09210 (ACLM45_09210) - 1681768..1682109 (+) 342 WP_006042663.1 YbaB/EbfC family nucleoid-associated protein -
  ACLM45_RS09215 (ACLM45_09215) rsgA 1682084..1682965 (-) 882 WP_415411398.1 ribosome small subunit-dependent GTPase A -
  ACLM45_RS09220 (ACLM45_09220) - 1682985..1683227 (-) 243 WP_006042665.1 sulfurtransferase TusA family protein -
  ACLM45_RS09225 (ACLM45_09225) dnaJ 1683230..1684360 (-) 1131 WP_006042666.1 molecular chaperone DnaJ -
  ACLM45_RS09230 (ACLM45_09230) grpE 1684411..1685124 (-) 714 WP_415408915.1 nucleotide exchange factor GrpE -
  ACLM45_RS09235 (ACLM45_09235) pilB/pilB1 1685220..1686878 (+) 1659 WP_415408917.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  ACLM45_RS09240 (ACLM45_09240) pilT 1686889..1687962 (+) 1074 WP_415408919.1 type IV pilus twitching motility protein PilT Machinery gene
  ACLM45_RS09245 (ACLM45_09245) - 1687979..1689232 (+) 1254 WP_415408921.1 type II secretion system F family protein -
  ACLM45_RS09250 (ACLM45_09250) - 1689267..1690529 (-) 1263 WP_415411399.1 NAD(P)/FAD-dependent oxidoreductase -
  ACLM45_RS09255 (ACLM45_09255) msrB 1690501..1691019 (-) 519 WP_415408923.1 peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 60253.46 Da        Isoelectric Point: 4.7503

>NTDB_id=1095720 ACLM45_RS09235 WP_415408917.1 1685220..1686878(+) (pilB/pilB1) [Synechococcus sp. A10-1-5-9]
MSDVRRRLELELLLKRAIPGTLSSADEPDLLNDLTAMGLDPTRHGELTAALSSLLKPARAEPGQAPDDNDENTESIADTA
TSYLAEFTVDGVLEDDPDQAALQSSSIVDLEDGLNDADRSPVINLVDRILMQALQLGASDIHVEPQQAGLQLRFRQDGVL
QSSIEPLPSRLVPAVTSRFKIMADLDIAERRMAQDGRIRRRFQHRTVDFRVNCLPSRFGEKIVLRLLDSSATQLGLDKLI
TSESTLDTVRSLGSKPFGMILVTGPTGSGKSTTLYSLLAERNDPGINISTVEDPIEYTLPGITQCQVNREKGFDFSQALR
AFMRQDPDVLLVGETRDLETAKTAIEAALTGHLVLTTLHCNDAPSAIARLDEMGVEPFMVSASLIGIVSQRLLRRVCPDC
RIPYHPKAEELGRFGLMTSNEEGVTFFKPNHREGHSDACPTCQGSGYKGRVGVYEVLRMNEVMAAAVAKGATTDMVRQLA
LESGMKTLLGYSLDLVREGRTTLEEVGRMVLTDAGLESERRARALSTLSCSGCGGGLQEGWLECPYCLTPRQ

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=1095720 ACLM45_RS09235 WP_415408917.1 1685220..1686878(+) (pilB/pilB1) [Synechococcus sp. A10-1-5-9]
GTGAGTGACGTTCGCCGACGTTTGGAACTGGAACTGCTGCTGAAGCGAGCGATCCCTGGGACTCTCAGCAGCGCTGACGA
ACCGGATCTTCTGAACGATCTCACGGCGATGGGACTGGATCCCACTCGCCATGGCGAACTGACTGCGGCGCTTAGCAGCC
TCCTCAAGCCAGCAAGGGCGGAACCCGGTCAGGCACCAGACGACAACGACGAAAACACGGAGAGCATCGCCGACACGGCC
ACCTCCTATCTCGCGGAATTCACCGTGGACGGGGTACTGGAAGACGACCCCGATCAAGCCGCGCTGCAGTCTTCCTCCAT
CGTGGATCTGGAAGACGGACTGAACGATGCCGATCGTTCACCGGTGATCAATCTCGTGGACCGGATCCTGATGCAGGCGC
TGCAGCTGGGAGCCAGCGATATTCACGTGGAGCCCCAGCAGGCTGGGCTGCAATTGCGCTTCCGCCAGGACGGCGTTCTG
CAGAGCAGCATCGAACCTCTGCCGAGCCGCTTGGTACCGGCAGTGACCTCCCGCTTCAAAATCATGGCGGACTTAGATAT
TGCTGAACGGCGCATGGCCCAGGACGGGCGAATCCGGCGCAGATTCCAGCACCGCACCGTGGACTTCAGGGTGAATTGCC
TGCCCAGCCGATTTGGGGAAAAGATCGTGTTACGCCTGCTGGATAGCTCCGCCACTCAGCTGGGCCTCGACAAGCTGATC
ACGAGTGAGTCAACGCTTGACACCGTGCGATCCCTGGGTTCCAAACCCTTCGGAATGATCCTGGTGACCGGGCCCACCGG
ATCGGGGAAATCCACCACGCTCTATTCCCTGCTGGCGGAACGCAACGACCCCGGGATCAATATCTCCACAGTGGAGGATC
CGATCGAATACACCCTCCCAGGCATAACCCAATGCCAAGTGAACCGGGAGAAAGGTTTCGATTTCAGCCAGGCGCTGCGG
GCCTTCATGCGCCAGGACCCGGATGTGCTGCTCGTGGGGGAGACCCGTGACTTGGAAACAGCCAAGACGGCCATCGAAGC
AGCACTGACAGGTCACCTCGTGCTCACCACGTTGCATTGCAACGACGCTCCCAGTGCCATCGCCCGGCTGGATGAGATGG
GCGTTGAACCCTTCATGGTGAGCGCATCACTGATCGGCATCGTGTCCCAGCGATTGCTGCGGCGTGTCTGCCCGGACTGC
CGCATTCCTTACCACCCGAAAGCCGAGGAACTTGGTCGGTTCGGCTTGATGACCAGCAATGAGGAGGGCGTGACGTTCTT
CAAACCCAACCACCGAGAAGGGCATTCGGACGCATGTCCCACCTGTCAGGGGAGCGGCTACAAGGGCCGGGTGGGGGTTT
ATGAGGTGCTGCGCATGAATGAAGTGATGGCTGCTGCGGTGGCCAAGGGAGCCACCACCGACATGGTGCGCCAGCTGGCC
CTGGAATCAGGGATGAAAACACTGTTGGGCTACAGCCTTGATCTGGTTCGCGAAGGGCGCACCACCCTGGAGGAAGTCGG
CCGCATGGTGCTCACTGATGCAGGCCTCGAATCCGAACGCCGGGCCCGAGCCCTGAGCACGCTCAGCTGCAGCGGATGTG
GTGGCGGACTTCAGGAAGGTTGGCTGGAATGTCCGTACTGCCTTACCCCACGCCAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(129-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

65.784

82.065

0.54

Multiple sequence alignment