Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACMVYK_RS06580 Genome accession   NZ_CP180313
Coordinates   1364880..1365509 (-) Length   209 a.a.
NCBI ID   WP_001830439.1    Uniprot ID   A0A2G7HYX3
Organism   Staphylococcus epidermidis strain YSMAS1_1_E3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359880..1370509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYK_RS06550 (ACMVYK_06550) - 1360273..1360803 (-) 531 WP_001830371.1 acyl-CoA thioesterase -
  ACMVYK_RS06555 (ACMVYK_06555) - 1360883..1362124 (-) 1242 WP_001832467.1 aminopeptidase -
  ACMVYK_RS06560 (ACMVYK_06560) - 1362126..1362341 (-) 216 WP_001830421.1 DUF1128 domain-containing protein -
  ACMVYK_RS06565 (ACMVYK_06565) - 1362482..1362946 (+) 465 WP_415404490.1 low molecular weight protein-tyrosine-phosphatase -
  ACMVYK_RS06570 (ACMVYK_06570) - 1362954..1363238 (+) 285 WP_001830401.1 YtxH domain-containing protein -
  ACMVYK_RS06575 (ACMVYK_06575) - 1363645..1364823 (+) 1179 WP_001830411.1 YihY/virulence factor BrkB family protein -
  ACMVYK_RS06580 (ACMVYK_06580) vraR 1364880..1365509 (-) 630 WP_001830439.1 two-component system response regulator VraR Regulator
  ACMVYK_RS06585 (ACMVYK_06585) vraS 1365499..1366545 (-) 1047 WP_001830374.1 sensor histidine kinase Regulator
  ACMVYK_RS06590 (ACMVYK_06590) liaF 1366542..1367243 (-) 702 WP_002457093.1 cell wall-active antibiotics response protein LiaF -
  ACMVYK_RS06595 (ACMVYK_06595) - 1367258..1367644 (-) 387 WP_001830382.1 hypothetical protein -
  ACMVYK_RS06600 (ACMVYK_06600) map 1367802..1368557 (-) 756 WP_001830397.1 type I methionyl aminopeptidase -
  ACMVYK_RS06605 (ACMVYK_06605) - 1368731..1369717 (+) 987 WP_002457091.1 FUSC family protein -
  ACMVYK_RS06610 (ACMVYK_06610) isaB 1369867..1370403 (-) 537 WP_001830372.1 immunodominant staphylococcal antigen IsaB family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23584.19 Da        Isoelectric Point: 4.7166

>NTDB_id=1095196 ACMVYK_RS06580 WP_001830439.1 1364880..1365509(-) (vraR) [Staphylococcus epidermidis strain YSMAS1_1_E3]
MAIKVLFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKDAITKAHELKPDLILMDLLMDDMDGVEATTEIKKDLPQIKVV
MLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1095196 ACMVYK_RS06580 WP_001830439.1 1364880..1365509(-) (vraR) [Staphylococcus epidermidis strain YSMAS1_1_E3]
GTGGCGATTAAAGTTTTATTTGTTGATGATCATGAAATGGTAAGAATCGGTATTTCAAGCTATCTTTCAACTCAAGAAGA
TATAGAAGTAGTAGGTGAGGGTGCTTCTGGTAAAGATGCTATCACCAAAGCGCATGAGCTAAAACCAGATTTAATATTAA
TGGATTTACTTATGGACGATATGGATGGTGTAGAAGCAACTACTGAAATAAAAAAAGATTTACCTCAAATTAAAGTAGTC
ATGTTAACAAGCTTTATAGAGGATAAAGAAGTTTATCGTGCACTTGATTCTGGAGTAGATAGTTATATTTTAAAGACAAC
AAGTGCAAGTGATATAGCTGACGCTGTGCGTAAAACGTATGAAGGTGAATCAGTATTTGAACCAGAAGTGTTAGTAAAAA
TGCGCAATCGTATGAAAAAACGTGCCGAGCTTTATGAAATGTTGACAGAAAGAGAAATGGAGATCCTATTACTTATAGCT
AAAGGATACTCTAACCAAGAGATTGCAAGCGCCTCTCATATCACCATCAAAACAGTAAAAACTCATGTAAGTAACATACT
AAGTAAATTAGAAGTACAAGATCGAACACAAGCAGTAATATATGCGTTCCAGCATAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7HYX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368

Multiple sequence alignment