Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | ACMVYK_RS03515 | Genome accession | NZ_CP180313 |
| Coordinates | 712338..713210 (+) | Length | 290 a.a. |
| NCBI ID | WP_002484839.1 | Uniprot ID | A0A4Y7VXK4 |
| Organism | Staphylococcus epidermidis strain YSMAS1_1_E3 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 676688..746869 | 712338..713210 | within | 0 |
Gene organization within MGE regions
Location: 676688..746869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMVYK_RS03370 (ACMVYK_03370) | - | 677775..678518 (+) | 744 | WP_002439460.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| ACMVYK_RS03375 (ACMVYK_03375) | pknB | 678515..680518 (+) | 2004 | WP_002439462.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| ACMVYK_RS03380 (ACMVYK_03380) | rsgA | 680826..681701 (+) | 876 | WP_002456227.1 | ribosome small subunit-dependent GTPase A | - |
| ACMVYK_RS03385 (ACMVYK_03385) | rpe | 681702..682346 (+) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| ACMVYK_RS03390 (ACMVYK_03390) | - | 682351..682986 (+) | 636 | WP_002489340.1 | thiamine diphosphokinase | - |
| ACMVYK_RS03395 (ACMVYK_03395) | rpmB | 683069..683257 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| ACMVYK_RS03400 (ACMVYK_03400) | - | 683615..683989 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| ACMVYK_RS03405 (ACMVYK_03405) | fakA | 684004..685662 (+) | 1659 | WP_002489351.1 | fatty acid kinase catalytic subunit FakA | - |
| ACMVYK_RS03410 (ACMVYK_03410) | recG | 685866..687914 (+) | 2049 | WP_020368084.1 | ATP-dependent DNA helicase RecG | - |
| ACMVYK_RS03415 (ACMVYK_03415) | fapR | 688073..688633 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| ACMVYK_RS03420 (ACMVYK_03420) | plsX | 688635..689612 (+) | 978 | WP_001830112.1 | phosphate acyltransferase PlsX | - |
| ACMVYK_RS03425 (ACMVYK_03425) | fabD | 689614..690540 (+) | 927 | WP_001830062.1 | ACP S-malonyltransferase | - |
| ACMVYK_RS03430 (ACMVYK_03430) | fabG | 690533..691267 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ACMVYK_RS03435 (ACMVYK_03435) | - | 691494..691727 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| ACMVYK_RS03440 (ACMVYK_03440) | rnc | 691842..692579 (+) | 738 | WP_002470220.1 | ribonuclease III | - |
| ACMVYK_RS03445 (ACMVYK_03445) | smc | 692706..696275 (+) | 3570 | WP_002502436.1 | chromosome segregation protein SMC | - |
| ACMVYK_RS03450 (ACMVYK_03450) | ftsY | 696272..697498 (+) | 1227 | WP_415405253.1 | signal recognition particle-docking protein FtsY | - |
| ACMVYK_RS03455 (ACMVYK_03455) | - | 697500..697832 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| ACMVYK_RS03460 (ACMVYK_03460) | ffh | 697863..699230 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| ACMVYK_RS03465 (ACMVYK_03465) | rpsP | 699538..699813 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| ACMVYK_RS03470 (ACMVYK_03470) | rimM | 699940..700443 (+) | 504 | WP_237340748.1 | ribosome maturation factor RimM | - |
| ACMVYK_RS03475 (ACMVYK_03475) | trmD | 700443..701180 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACMVYK_RS03480 (ACMVYK_03480) | rplS | 701286..701636 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| ACMVYK_RS03485 (ACMVYK_03485) | - | 702166..704769 (-) | 2604 | WP_020368058.1 | YfhO family protein | - |
| ACMVYK_RS03490 (ACMVYK_03490) | - | 704762..707362 (-) | 2601 | WP_252920555.1 | YfhO family protein | - |
| ACMVYK_RS03495 (ACMVYK_03495) | ylqF | 707691..708554 (+) | 864 | WP_002468554.1 | ribosome biogenesis GTPase YlqF | - |
| ACMVYK_RS03500 (ACMVYK_03500) | - | 708559..709329 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| ACMVYK_RS03505 (ACMVYK_03505) | sucC | 709437..710603 (+) | 1167 | WP_002439496.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACMVYK_RS03510 (ACMVYK_03510) | sucD | 710625..711533 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| ACMVYK_RS03515 (ACMVYK_03515) | dprA | 712338..713210 (+) | 873 | WP_002484839.1 | DNA-processing protein DprA | Machinery gene |
| ACMVYK_RS03520 (ACMVYK_03520) | topA | 713393..715462 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| ACMVYK_RS03525 (ACMVYK_03525) | trmFO | 715487..716794 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACMVYK_RS03530 (ACMVYK_03530) | xerC | 717049..717909 (+) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| ACMVYK_RS03535 (ACMVYK_03535) | hslV | 717913..718455 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| ACMVYK_RS03540 (ACMVYK_03540) | hslU | 718524..719927 (+) | 1404 | WP_001829474.1 | ATP-dependent protease ATPase subunit HslU | - |
| ACMVYK_RS03545 (ACMVYK_03545) | codY | 719951..720721 (+) | 771 | WP_002439506.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| ACMVYK_RS03550 (ACMVYK_03550) | rpsB | 721084..721872 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
| ACMVYK_RS03555 (ACMVYK_03555) | tsf | 722024..722902 (+) | 879 | WP_415405263.1 | translation elongation factor Ts | - |
| ACMVYK_RS03560 (ACMVYK_03560) | pyrH | 723043..723765 (+) | 723 | WP_002439511.1 | UMP kinase | - |
| ACMVYK_RS03565 (ACMVYK_03565) | frr | 723782..724336 (+) | 555 | WP_001829472.1 | ribosome recycling factor | - |
| ACMVYK_RS03570 (ACMVYK_03570) | - | 724557..725327 (+) | 771 | WP_001832561.1 | isoprenyl transferase | - |
| ACMVYK_RS03575 (ACMVYK_03575) | - | 725331..726113 (+) | 783 | WP_001829499.1 | phosphatidate cytidylyltransferase | - |
| ACMVYK_RS03580 (ACMVYK_03580) | rseP | 726347..727633 (+) | 1287 | WP_001829501.1 | RIP metalloprotease RseP | - |
| ACMVYK_RS03585 (ACMVYK_03585) | - | 727652..729355 (+) | 1704 | WP_001829513.1 | proline--tRNA ligase | - |
| ACMVYK_RS03590 (ACMVYK_03590) | - | 729605..733915 (+) | 4311 | WP_002456566.1 | PolC-type DNA polymerase III | - |
| ACMVYK_RS03595 (ACMVYK_03595) | rimP | 734094..734561 (+) | 468 | WP_002439519.1 | ribosome maturation factor RimP | - |
| ACMVYK_RS03600 (ACMVYK_03600) | nusA | 734582..735805 (+) | 1224 | WP_002456565.1 | transcription termination factor NusA | - |
| ACMVYK_RS03605 (ACMVYK_03605) | rnpM | 735823..736107 (+) | 285 | WP_001829465.1 | RNase P modulator RnpM | - |
| ACMVYK_RS03610 (ACMVYK_03610) | - | 736107..736424 (+) | 318 | WP_002439520.1 | YlxQ family RNA-binding protein | - |
| ACMVYK_RS03615 (ACMVYK_03615) | infB | 736429..738591 (+) | 2163 | WP_002468903.1 | translation initiation factor IF-2 | - |
| ACMVYK_RS03620 (ACMVYK_03620) | rbfA | 738894..739244 (+) | 351 | WP_001829509.1 | 30S ribosome-binding factor RbfA | - |
| ACMVYK_RS03625 (ACMVYK_03625) | truB | 739382..740299 (+) | 918 | WP_002456563.1 | tRNA pseudouridine(55) synthase TruB | - |
| ACMVYK_RS03630 (ACMVYK_03630) | - | 740315..741286 (+) | 972 | WP_001832563.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ACMVYK_RS03635 (ACMVYK_03635) | rpsO | 741406..741675 (+) | 270 | WP_002439528.1 | 30S ribosomal protein S15 | - |
| ACMVYK_RS03640 (ACMVYK_03640) | pnp | 741807..743912 (+) | 2106 | WP_001832554.1 | polyribonucleotide nucleotidyltransferase | - |
| ACMVYK_RS03645 (ACMVYK_03645) | rnjB | 744280..745953 (+) | 1674 | WP_002457357.1 | ribonuclease J2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33717.61 Da Isoelectric Point: 9.3616
>NTDB_id=1095181 ACMVYK_RS03515 WP_002484839.1 712338..713210(+) (dprA) [Staphylococcus epidermidis strain YSMAS1_1_E3]
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=1095181 ACMVYK_RS03515 WP_002484839.1 712338..713210(+) (dprA) [Staphylococcus epidermidis strain YSMAS1_1_E3]
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |