Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   ACMVYM_RS08660 Genome accession   NZ_CP180297
Coordinates   1778841..1779506 (-) Length   221 a.a.
NCBI ID   WP_001830679.1    Uniprot ID   A0A2G7HYS8
Organism   Staphylococcus epidermidis strain YSMAS1_1_C10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1773841..1784506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVYM_RS08640 (ACMVYM_08640) - 1774371..1774961 (-) 591 WP_001830621.1 DUF4064 domain-containing protein -
  ACMVYM_RS08645 (ACMVYM_08645) - 1775065..1777077 (-) 2013 WP_002456335.1 ABC transporter permease -
  ACMVYM_RS08650 (ACMVYM_08650) - 1777079..1777828 (-) 750 WP_001830627.1 ABC transporter ATP-binding protein -
  ACMVYM_RS08655 (ACMVYM_08655) braS 1777939..1778835 (-) 897 WP_002456718.1 sensor histidine kinase Regulator
  ACMVYM_RS08660 (ACMVYM_08660) braR 1778841..1779506 (-) 666 WP_001830679.1 response regulator transcription factor Regulator
  ACMVYM_RS08665 (ACMVYM_08665) - 1779537..1779716 (-) 180 WP_001830653.1 hypothetical protein -
  ACMVYM_RS08670 (ACMVYM_08670) - 1780014..1781483 (+) 1470 WP_002437984.1 alkaline phosphatase -
  ACMVYM_RS08675 (ACMVYM_08675) - 1781606..1783150 (-) 1545 WP_001830616.1 NAD(P)H-binding protein -

Sequence


Protein


Download         Length: 221 a.a.        Molecular weight: 25629.71 Da        Isoelectric Point: 5.0250

>NTDB_id=1095165 ACMVYM_RS08660 WP_001830679.1 1778841..1779506(-) (braR) [Staphylococcus epidermidis strain YSMAS1_1_C10]
MKIFIVEDDLVIAESLANELSKWNYEVHVVDNFEKIMEDFRRVEPQLVLLDINLPTLNGFHWCQEMRKVSHVPIMFISSR
TDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILK
LLFQNENKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDDLIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1095165 ACMVYM_RS08660 WP_001830679.1 1778841..1779506(-) (braR) [Staphylococcus epidermidis strain YSMAS1_1_C10]
ATGAAAATTTTCATTGTAGAAGACGATTTAGTGATTGCTGAAAGTTTAGCTAATGAGCTATCTAAATGGAATTATGAGGT
GCATGTGGTTGATAATTTTGAAAAGATAATGGAAGATTTTCGCCGAGTAGAACCACAACTCGTATTATTAGATATCAATC
TACCAACACTTAATGGCTTCCATTGGTGCCAAGAAATGCGAAAAGTATCTCATGTGCCTATTATGTTTATTAGTTCAAGA
ACAGATAATATGGATCAAATTCTGGCTATCCAAATGGGTGGCGATGATTTTATCGAGAAACCATTTAACTTGTCTTTAAC
AGTAGCTAAAATTCAGGCACTATTGCGTCGCACTTATGATTTATCAATAGCTCGTGATGAAATAGCTGTTAAAGGTTGTA
AACTAATTGTTGATGAGGCCAAGCTTAGCAAGGATAATGAACATGTTCAACTTTCCTTAACAGAGCTACAGATATTAAAA
TTGTTATTTCAAAATGAAAATAAATATGTAAGTCGTACAGCTTTAATTGAGAAGTGTTGGGAGTCTGAGAATTTTATTGA
TGATAATACGCTCGCAGTAAATATGACACGATTACGAAAAAAATTACTTTCTATCGGTGTCGATGATTTAATTGAGACAA
AGAAAAATGTAGGATACAGGGTTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2G7HYS8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792


Multiple sequence alignment