Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | ACMVYM_RS02400 | Genome accession | NZ_CP180297 |
| Coordinates | 490689..491561 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain YSMAS1_1_C10 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 458475..500742 | 490689..491561 | within | 0 |
Gene organization within MGE regions
Location: 458475..500742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMVYM_RS02260 (ACMVYM_02260) | rsgA | 459114..459989 (+) | 876 | WP_001830137.1 | ribosome small subunit-dependent GTPase A | - |
| ACMVYM_RS02265 (ACMVYM_02265) | rpe | 459990..460634 (+) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| ACMVYM_RS02270 (ACMVYM_02270) | - | 460639..461274 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| ACMVYM_RS02275 (ACMVYM_02275) | rpmB | 461357..461545 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| ACMVYM_RS02280 (ACMVYM_02280) | - | 461903..462277 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| ACMVYM_RS02285 (ACMVYM_02285) | fakA | 462292..463950 (+) | 1659 | WP_001830116.1 | fatty acid kinase catalytic subunit FakA | - |
| ACMVYM_RS02290 (ACMVYM_02290) | recG | 464154..466202 (+) | 2049 | WP_001830069.1 | ATP-dependent DNA helicase RecG | - |
| ACMVYM_RS02295 (ACMVYM_02295) | fapR | 466361..466921 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| ACMVYM_RS02300 (ACMVYM_02300) | plsX | 466923..467900 (+) | 978 | WP_001830112.1 | phosphate acyltransferase PlsX | - |
| ACMVYM_RS02305 (ACMVYM_02305) | fabD | 467902..468828 (+) | 927 | WP_337229079.1 | ACP S-malonyltransferase | - |
| ACMVYM_RS02310 (ACMVYM_02310) | fabG | 468821..469555 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ACMVYM_RS02315 (ACMVYM_02315) | - | 469719..469952 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| ACMVYM_RS02320 (ACMVYM_02320) | rnc | 470067..470804 (+) | 738 | WP_001830158.1 | ribonuclease III | - |
| ACMVYM_RS02325 (ACMVYM_02325) | smc | 470931..474500 (+) | 3570 | WP_001833035.1 | chromosome segregation protein SMC | - |
| ACMVYM_RS02330 (ACMVYM_02330) | ftsY | 474497..475723 (+) | 1227 | WP_001830080.1 | signal recognition particle-docking protein FtsY | - |
| ACMVYM_RS02335 (ACMVYM_02335) | - | 475725..476057 (+) | 333 | WP_001830102.1 | putative DNA-binding protein | - |
| ACMVYM_RS02340 (ACMVYM_02340) | ffh | 476088..477455 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| ACMVYM_RS02345 (ACMVYM_02345) | rpsP | 477887..478162 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| ACMVYM_RS02350 (ACMVYM_02350) | rimM | 478289..478792 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| ACMVYM_RS02355 (ACMVYM_02355) | trmD | 478792..479529 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ACMVYM_RS02360 (ACMVYM_02360) | rplS | 479635..479985 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| ACMVYM_RS02365 (ACMVYM_02365) | - | 480516..483119 (-) | 2604 | WP_002439489.1 | YfhO family protein | - |
| ACMVYM_RS02370 (ACMVYM_02370) | - | 483112..485712 (-) | 2601 | WP_002439492.1 | YfhO family protein | - |
| ACMVYM_RS02375 (ACMVYM_02375) | - | 485871..486020 (+) | 150 | WP_162154119.1 | hypothetical protein | - |
| ACMVYM_RS02380 (ACMVYM_02380) | ylqF | 486041..486904 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| ACMVYM_RS02385 (ACMVYM_02385) | - | 486909..487679 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| ACMVYM_RS02390 (ACMVYM_02390) | sucC | 487787..488953 (+) | 1167 | WP_002439496.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACMVYM_RS02395 (ACMVYM_02395) | sucD | 488975..489883 (+) | 909 | WP_001829473.1 | succinate--CoA ligase subunit alpha | - |
| ACMVYM_RS02400 (ACMVYM_02400) | dprA | 490689..491561 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| ACMVYM_RS02405 (ACMVYM_02405) | topA | 491744..493813 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| ACMVYM_RS02410 (ACMVYM_02410) | trmFO | 493838..495145 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ACMVYM_RS02415 (ACMVYM_02415) | xerC | 495400..496260 (+) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| ACMVYM_RS02420 (ACMVYM_02420) | hslV | 496264..496806 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| ACMVYM_RS02425 (ACMVYM_02425) | hslU | 496875..498278 (+) | 1404 | WP_001829474.1 | ATP-dependent protease ATPase subunit HslU | - |
| ACMVYM_RS02430 (ACMVYM_02430) | codY | 498302..499075 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| ACMVYM_RS02435 (ACMVYM_02435) | rpsB | 499434..500222 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=1095143 ACMVYM_RS02400 WP_001829468.1 490689..491561(+) (dprA) [Staphylococcus epidermidis strain YSMAS1_1_C10]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=1095143 ACMVYM_RS02400 WP_001829468.1 490689..491561(+) (dprA) [Staphylococcus epidermidis strain YSMAS1_1_C10]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |