Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACMVYO_RS03945 | Genome accession | NZ_CP180296 |
| Coordinates | 786180..786575 (-) | Length | 131 a.a. |
| NCBI ID | WP_017175139.1 | Uniprot ID | - |
| Organism | Staphylococcus hominis strain YSMAS1_1_D4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 781180..791575
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACMVYO_RS03920 (ACMVYO_03920) | thiE | 781713..782351 (-) | 639 | WP_048787784.1 | thiamine phosphate synthase | - |
| ACMVYO_RS03925 (ACMVYO_03925) | thiM | 782354..783142 (-) | 789 | WP_017175143.1 | hydroxyethylthiazole kinase | - |
| ACMVYO_RS03930 (ACMVYO_03930) | thiD | 783135..783956 (-) | 822 | WP_415401281.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ACMVYO_RS03935 (ACMVYO_03935) | tenA | 783949..784638 (-) | 690 | WP_019835613.1 | thiaminase II | - |
| ACMVYO_RS03940 (ACMVYO_03940) | - | 785030..785776 (-) | 747 | WP_017175140.1 | transglycosylase family protein | - |
| ACMVYO_RS03945 (ACMVYO_03945) | ssb | 786180..786575 (-) | 396 | WP_017175139.1 | single-stranded DNA-binding protein | Machinery gene |
| ACMVYO_RS03950 (ACMVYO_03950) | - | 786769..787209 (+) | 441 | WP_017175138.1 | YwpF-like family protein | - |
| ACMVYO_RS03955 (ACMVYO_03955) | fabZ | 787259..787696 (-) | 438 | WP_002448673.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ACMVYO_RS03960 (ACMVYO_03960) | murA | 787724..788989 (-) | 1266 | WP_017175137.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| ACMVYO_RS03965 (ACMVYO_03965) | - | 789096..789326 (-) | 231 | WP_017175136.1 | DUF1146 family protein | - |
| ACMVYO_RS03970 (ACMVYO_03970) | - | 789640..790041 (-) | 402 | WP_002448708.1 | F0F1 ATP synthase subunit epsilon | - |
| ACMVYO_RS03975 (ACMVYO_03975) | atpD | 790063..791475 (-) | 1413 | WP_017175135.1 | F0F1 ATP synthase subunit beta | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15148.29 Da Isoelectric Point: 5.9389
>NTDB_id=1095121 ACMVYO_RS03945 WP_017175139.1 786180..786575(-) (ssb) [Staphylococcus hominis strain YSMAS1_1_D4]
MLNKIVIVGRMTKDAKIYDNEEVKIATFSVATERNYKDENDEIACDYIFCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDNLELMNIK
MLNKIVIVGRMTKDAKIYDNEEVKIATFSVATERNYKDENDEIACDYIFCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDNLELMNIK
Nucleotide
Download Length: 396 bp
>NTDB_id=1095121 ACMVYO_RS03945 WP_017175139.1 786180..786575(-) (ssb) [Staphylococcus hominis strain YSMAS1_1_D4]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATGATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGATTATATATTTTGTAAAGCATTTG
GTAAGATGGCCAGCAACATTGAAAAATATACTTCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTCACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATAATCTCGAATTAATGAATATAAAATAA
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATGATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCGTGTGATTATATATTTTGTAAAGCATTTG
GTAAGATGGCCAGCAACATTGAAAAATATACTTCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTCACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATAATCTCGAATTAATGAATATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
75.573 |
100 |
0.756 |
| ssb | Staphylococcus aureus MW2 |
74.809 |
100 |
0.748 |