Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HW05_RS07770 Genome accession   NZ_CP008861
Coordinates   1691332..1691661 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H47921     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1686332..1696661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW05_RS07755 (HW05_07855) uvrB 1687719..1689731 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  HW05_RS07760 (HW05_07860) - 1689919..1691115 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  HW05_RS07770 (HW05_07870) comEA/comE1 1691332..1691661 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  HW05_RS07775 (HW05_07875) - 1691852..1693849 (-) 1998 WP_049239278.1 polysaccharide biosynthesis protein -
  HW05_RS07780 - 1694289..1695311 (-) 1023 WP_043091148.1 MraY family glycosyltransferase -
  HW05_RS07785 - 1695311..1696264 (-) 954 WP_049239277.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=109501 HW05_RS07770 WP_003091430.1 1691332..1691661(-) (comEA/comE1) [Pseudomonas aeruginosa strain H47921]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=109501 HW05_RS07770 WP_003091430.1 1691332..1691661(-) (comEA/comE1) [Pseudomonas aeruginosa strain H47921]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAACAGGTCAATATCAACACGGTCGACG
AGGCTGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment