Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGHR8_RS25870 Genome accession   NZ_AP031445
Coordinates   5168416..5169084 (-) Length   222 a.a.
NCBI ID   WP_244095351.1    Uniprot ID   -
Organism   Enterocloster clostridioformis strain k19-0097-F3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5163416..5174084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHR8_RS25845 (K190097F3_50870) tig 5163928..5165061 (-) 1134 WP_002593950.1 trigger factor -
  ACGHR8_RS25850 (K190097F3_50880) - 5165228..5166622 (-) 1395 WP_173877235.1 aminopeptidase -
  ACGHR8_RS25855 (K190097F3_50890) - 5166695..5167669 (-) 975 WP_173877234.1 leucine-rich repeat protein -
  ACGHR8_RS25860 (K190097F3_50900) - 5167821..5167940 (-) 120 Protein_5086 helix-turn-helix domain-containing protein -
  ACGHR8_RS25865 (K190097F3_50910) - 5167935..5168198 (+) 264 Protein_5087 response regulator -
  ACGHR8_RS25870 (K190097F3_50920) rcrQ 5168416..5169084 (-) 669 WP_244095351.1 ABC transporter ATP-binding protein Regulator
  ACGHR8_RS25875 (K190097F3_50930) - 5169178..5170239 (-) 1062 WP_244095350.1 ABC transporter ATP-binding protein -
  ACGHR8_RS25880 (K190097F3_50940) - 5170232..5171965 (-) 1734 WP_173877233.1 ABC transporter ATP-binding protein -
  ACGHR8_RS25885 (K190097F3_50950) - 5172011..5172448 (-) 438 WP_002587222.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGHR8_RS25890 (K190097F3_50960) - 5172642..5172863 (-) 222 WP_157135207.1 hypothetical protein -
  ACGHR8_RS25895 - 5173019..5173309 (+) 291 WP_002587221.1 transposase -
  ACGHR8_RS25900 - 5173579..5173794 (+) 216 WP_271824315.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24347.94 Da        Isoelectric Point: 6.8745

>NTDB_id=109501 ACGHR8_RS25870 WP_244095351.1 5168416..5169084(-) (rcrQ) [Enterocloster clostridioformis strain k19-0097-F3]
MHNISFSVKPGQKVAIVGSTGAGKTTLINLLMRFYELNGGKITLDGTDTKDMPRSNLRSNFGMVLQDTWLFGGTVAENIA
YSKPDATREEIVAAAKAARVDFFVRTMSHGYDTVLSNDAENISVGQRQLLTIARVFLCDPAVIILDEATSSVDTRTEIEI
GKAMKALMKNRTSFVIAHRLSTIIDADLILFMQNGNIIEQGTHEALLKAKGAYADMYYSQFA

Nucleotide


Download         Length: 669 bp        

>NTDB_id=109501 ACGHR8_RS25870 WP_244095351.1 5168416..5169084(-) (rcrQ) [Enterocloster clostridioformis strain k19-0097-F3]
ATGCACAACATCAGCTTCTCTGTAAAGCCGGGACAAAAGGTTGCAATCGTCGGCAGCACAGGAGCCGGAAAGACAACGCT
TATCAATCTGCTTATGCGGTTTTACGAGTTAAACGGCGGAAAAATCACTTTAGACGGAACCGACACAAAGGATATGCCCC
GTTCTAATTTGAGAAGTAATTTCGGAATGGTACTTCAAGATACATGGTTATTTGGCGGCACGGTTGCGGAAAATATTGCT
TACAGCAAGCCGGACGCTACCCGTGAAGAAATTGTAGCGGCGGCAAAAGCGGCCAGAGTGGATTTCTTTGTCCGCACAAT
GTCACACGGATATGATACGGTTTTAAGTAACGACGCGGAAAATATTTCTGTCGGCCAGCGGCAGCTTTTAACTATAGCCA
GAGTGTTTCTTTGCGATCCAGCGGTTATCATTTTGGACGAAGCAACTTCCAGCGTTGATACCCGTACAGAAATTGAGATC
GGAAAAGCTATGAAAGCCCTGATGAAAAACAGAACGAGCTTTGTAATCGCTCACAGGCTTTCAACCATTATAGACGCTGA
TTTGATCCTGTTCATGCAAAACGGAAATATTATCGAACAAGGAACGCACGAAGCCTTGTTAAAGGCAAAAGGGGCTTATG
CTGATATGTATTATAGCCAGTTTGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

60.181

99.55

0.599
  comA/nlmT Streptococcus mutans UA159

37.615

98.198

0.369
  rcrP Streptococcus mutans UA159

36.444

100

0.369
  comA Streptococcus pneumoniae Rx1

36.866

97.748

0.36
  comA Streptococcus pneumoniae D39

36.866

97.748

0.36
  comA Streptococcus pneumoniae R6

36.866

97.748

0.36

Multiple sequence alignment