Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | ACLCDX_RS11550 | Genome accession | NZ_CP180263 |
| Coordinates | 2282934..2283269 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain BS22LVI | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2277934..2288269
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLCDX_RS11530 (ACLCDX_11530) | gcvT | 2278421..2279519 (-) | 1099 | Protein_2229 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACLCDX_RS11535 (ACLCDX_11535) | - | 2280071..2281741 (+) | 1671 | WP_197172670.1 | DEAD/DEAH box helicase | - |
| ACLCDX_RS11540 (ACLCDX_11540) | - | 2281756..2282553 (+) | 798 | WP_197172669.1 | YqhG family protein | - |
| ACLCDX_RS11545 (ACLCDX_11545) | - | 2282736..2282900 (+) | 165 | WP_073206269.1 | anti-repressor SinI family protein | - |
| ACLCDX_RS11550 (ACLCDX_11550) | sinR | 2282934..2283269 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| ACLCDX_RS11555 (ACLCDX_11555) | tasA | 2283337..2284137 (-) | 801 | WP_024422970.1 | biofilm matrix protein TasA | - |
| ACLCDX_RS11560 (ACLCDX_11560) | sipW | 2284192..2284764 (-) | 573 | WP_024422971.1 | signal peptidase I SipW | - |
| ACLCDX_RS11565 (ACLCDX_11565) | tapA | 2284817..2285344 (-) | 528 | WP_098677430.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACLCDX_RS11570 (ACLCDX_11570) | - | 2285644..2285922 (+) | 279 | WP_171464609.1 | DUF3889 domain-containing protein | - |
| ACLCDX_RS11575 (ACLCDX_11575) | - | 2285956..2286150 (-) | 195 | WP_056767455.1 | YqzE family protein | - |
| ACLCDX_RS11580 (ACLCDX_11580) | - | 2286217..2286600 (-) | 384 | WP_197172668.1 | competence type IV pilus minor pilin ComGG | - |
| ACLCDX_RS11585 (ACLCDX_11585) | comGF | 2286597..2287349 (-) | 753 | WP_415315994.1 | competence type IV pilus minor pilin ComGF | - |
| ACLCDX_RS11590 (ACLCDX_11590) | comGD | 2287333..2287779 (-) | 447 | WP_197172667.1 | competence type IV pilus minor pilin ComGD | - |
| ACLCDX_RS11595 (ACLCDX_11595) | comGC | 2287772..2288065 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=1094975 ACLCDX_RS11550 WP_024422969.1 2282934..2283269(+) (sinR) [Bacillus safensis strain BS22LVI]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=1094975 ACLCDX_RS11550 WP_024422969.1 2282934..2283269(+) (sinR) [Bacillus safensis strain BS22LVI]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |