Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACMUEV_RS11435 Genome accession   NZ_CP180258
Coordinates   2467506..2469062 (-) Length   518 a.a.
NCBI ID   WP_347277630.1    Uniprot ID   -
Organism   Leptolyngbya sp. FACHB-1624     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2462506..2474062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMUEV_RS11405 (ACMUEV_11400) - 2464128..2464889 (+) 762 WP_190653206.1 PEP-CTERM sorting domain-containing protein -
  ACMUEV_RS11410 (ACMUEV_11405) rdgB 2464960..2465535 (-) 576 WP_190653205.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ACMUEV_RS11415 (ACMUEV_11410) - 2465532..2466224 (-) 693 WP_190653204.1 GDSL-type esterase/lipase family protein -
  ACMUEV_RS11420 (ACMUEV_11415) - 2466369..2466614 (+) 246 WP_017288966.1 DNA-directed RNA polymerase subunit omega -
  ACMUEV_RS11425 (ACMUEV_11420) - 2466661..2467098 (+) 438 WP_190653203.1 hypothetical protein -
  ACMUEV_RS11430 (ACMUEV_11425) - 2467095..2467454 (+) 360 WP_017288964.1 DUF1818 family protein -
  ACMUEV_RS11435 (ACMUEV_11430) comA 2467506..2469062 (-) 1557 WP_347277630.1 phospholipase D-like domain-containing protein Machinery gene
  ACMUEV_RS11440 (ACMUEV_11435) - 2469156..2470325 (+) 1170 WP_017288962.1 cysteine desulfurase family protein -
  ACMUEV_RS11445 (ACMUEV_11440) - 2470322..2470855 (-) 534 WP_190653202.1 hypothetical protein -
  ACMUEV_RS11450 (ACMUEV_11445) psbC 2470987..2472369 (-) 1383 WP_190653201.1 photosystem II reaction center protein CP43 -
  ACMUEV_RS11455 (ACMUEV_11450) psbD 2472353..2473408 (-) 1056 WP_017287122.1 photosystem II D2 protein (photosystem q(a) protein) -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 57546.44 Da        Isoelectric Point: 7.4818

>NTDB_id=1094887 ACMUEV_RS11435 WP_347277630.1 2467506..2469062(-) (comA) [Leptolyngbya sp. FACHB-1624]
MVRLNHLIQFSLCTLLFAGCRAASSSISVRPLPQDPNIQVFTNQAAASEYTEPYRKIIRAGDNLEEVLIDTITSAKSSID
VAVQEFRLPNVAKALRDRAAAGVTVRVIVENQYARPYSSYSAAEVEKLPEREKARYQESRTLIDQDQDGQLSLTEIQDRD
ALVILDVAKIPRIDDRADGSRGSNLMHHKFIVVDGKTTIVTSANFTMSDVHGDFARPSSRGNANNLLKMESVEVAQAFTA
EFELMWSDRKFGVKKPFRPAQQFKLGESVISLQFSPNSRTIPWEQTPNGLIAKTLQQSTQAIDLALFVFSDQDLVNTIEG
KSIRALIEPSFMYRPFSEGLDMLGVALSNNCKWEVNNRPWQNPIKTVGVPQLPPGDMLHHKFGIVDGHTVITGSHNWTLA
ANRGNDETVIVIRNPVVAAHFQREFDRLYANSVLGIPPAIQRKVEAEQKQCPPPSQSRTGLVNLNTATQAELEALPGVGS
GLAKRIIQARPFQSLEDLDRVPGVGKKLIERLSDRVTW

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=1094887 ACMUEV_RS11435 WP_347277630.1 2467506..2469062(-) (comA) [Leptolyngbya sp. FACHB-1624]
GTGGTCAGACTGAATCACCTTATCCAGTTTAGTCTCTGTACGCTCCTATTTGCGGGATGCCGAGCAGCTTCATCTTCGAT
CAGTGTGCGCCCACTGCCACAAGATCCCAACATCCAAGTCTTTACGAATCAAGCAGCGGCCTCTGAATATACTGAGCCGT
ATCGCAAAATTATAAGGGCGGGCGATAACTTAGAAGAAGTTTTAATCGATACGATCACGAGTGCAAAGTCGAGCATTGAT
GTTGCGGTACAAGAGTTTCGATTGCCCAATGTGGCGAAGGCACTGCGCGATCGCGCAGCAGCAGGCGTGACTGTTCGAGT
GATTGTCGAAAATCAGTACGCTCGTCCTTACAGCAGTTATTCTGCCGCAGAAGTTGAGAAATTGCCGGAGCGAGAAAAAG
CGAGATATCAGGAATCCAGAACGCTGATCGATCAAGATCAAGATGGACAGTTAAGCCTGACTGAAATTCAGGATCGAGAT
GCTTTAGTGATTTTGGATGTTGCGAAGATTCCTCGGATCGATGATCGAGCCGATGGCAGCCGAGGCAGTAACTTAATGCA
CCACAAATTCATAGTTGTGGATGGAAAGACTACGATCGTGACTTCGGCAAACTTCACGATGTCAGACGTACACGGAGACT
TTGCTCGTCCTAGCAGCCGTGGCAATGCTAATAATTTGCTGAAGATGGAAAGTGTGGAAGTTGCACAGGCTTTTACAGCA
GAATTTGAACTCATGTGGAGCGATCGCAAATTTGGCGTGAAAAAGCCATTTCGTCCAGCACAGCAGTTCAAACTGGGCGA
GAGCGTGATTTCCTTGCAGTTCTCACCCAATTCCAGAACGATTCCCTGGGAACAAACACCCAATGGTTTGATTGCCAAAA
CGCTTCAGCAATCCACGCAAGCGATCGATTTAGCGTTGTTTGTGTTCTCGGATCAGGATCTAGTTAATACGATCGAAGGA
AAATCAATTCGGGCATTAATCGAACCCAGCTTCATGTATAGACCTTTCAGCGAAGGTTTAGATATGTTAGGCGTGGCGCT
AAGTAATAACTGCAAGTGGGAAGTCAATAATCGTCCTTGGCAAAATCCCATCAAGACAGTTGGAGTGCCGCAACTTCCGC
CCGGTGATATGTTGCATCACAAGTTTGGAATTGTAGACGGACATACCGTGATTACAGGGTCTCATAACTGGACGCTTGCC
GCGAATCGTGGAAATGATGAAACGGTTATCGTGATTCGGAATCCGGTAGTTGCAGCCCATTTTCAACGAGAATTTGATCG
ACTGTATGCAAATTCAGTTCTGGGGATTCCTCCAGCAATTCAGCGCAAGGTTGAGGCTGAACAGAAACAATGTCCTCCAC
CAAGCCAATCTCGCACCGGGTTAGTCAATCTCAATACTGCAACTCAGGCAGAGTTAGAAGCATTGCCGGGAGTTGGCTCA
GGATTAGCGAAACGAATCATTCAAGCCCGTCCATTTCAGTCCTTGGAAGATCTCGATCGTGTGCCTGGTGTCGGGAAGAA
GTTGATAGAACGCTTGAGCGATCGTGTGACCTGGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(461-517)

PLD-like domain (PLDc_2)

(292-428)

PLD-like domain (PLDc_2)

(68-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.928

99.035

0.485

Multiple sequence alignment