Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACLBKW_RS14815 Genome accession   NZ_CP180232
Coordinates   2862148..2862789 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2857148..2867789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKW_RS14780 (ACLBKW_14780) - 2858276..2858707 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  ACLBKW_RS14785 (ACLBKW_14785) - 2858707..2859048 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  ACLBKW_RS14790 (ACLBKW_14790) - 2859041..2860519 (+) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  ACLBKW_RS14795 (ACLBKW_14795) - 2860526..2861005 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  ACLBKW_RS14800 (ACLBKW_14800) - 2861005..2861286 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  ACLBKW_RS14805 (ACLBKW_14805) mnhG 2861270..2861644 (+) 375 WP_081114703.1 monovalent cation/H(+) antiporter subunit G -
  ACLBKW_RS14810 (ACLBKW_14810) - 2861735..2862124 (-) 390 WP_017367960.1 hotdog fold thioesterase -
  ACLBKW_RS14815 (ACLBKW_14815) comA 2862148..2862789 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  ACLBKW_RS14820 (ACLBKW_14820) comP 2862870..2865182 (-) 2313 WP_171465713.1 ATP-binding protein Regulator
  ACLBKW_RS14825 (ACLBKW_14825) comX 2865240..2865407 (-) 168 WP_108611760.1 competence pheromone ComX -
  ACLBKW_RS14830 (ACLBKW_14830) - 2865404..2866318 (-) 915 WP_113747034.1 polyprenyl synthetase family protein -
  ACLBKW_RS14835 (ACLBKW_14835) degQ 2866470..2866610 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ACLBKW_RS14840 (ACLBKW_14840) - 2867116..2867469 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=1094694 ACLBKW_RS14815 WP_007500477.1 2862148..2862789(-) (comA) [Bacillus altitudinis strain Ba]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1094694 ACLBKW_RS14815 WP_007500477.1 2862148..2862789(-) (comA) [Bacillus altitudinis strain Ba]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAACCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGCTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment