Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACLBKW_RS11435 Genome accession   NZ_CP180232
Coordinates   2240330..2241400 (-) Length   356 a.a.
NCBI ID   WP_019743634.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2235330..2246400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKW_RS11385 (ACLBKW_11385) sipW 2235431..2236003 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ACLBKW_RS11390 (ACLBKW_11390) tapA 2236053..2236580 (-) 528 WP_304717077.1 amyloid fiber anchoring/assembly protein TapA -
  ACLBKW_RS11395 (ACLBKW_11395) - 2236833..2237159 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  ACLBKW_RS11400 (ACLBKW_11400) - 2237194..2237382 (-) 189 WP_414834365.1 YqzE family protein -
  ACLBKW_RS11405 (ACLBKW_11405) - 2237443..2237826 (-) 384 WP_039964023.1 competence type IV pilus minor pilin ComGG -
  ACLBKW_RS11410 (ACLBKW_11410) comGF 2237823..2238320 (-) 498 WP_250026311.1 competence type IV pilus minor pilin ComGF -
  ACLBKW_RS11415 (ACLBKW_11415) comGE 2238262..2238576 (-) 315 WP_148780034.1 competence type IV pilus minor pilin ComGE -
  ACLBKW_RS11420 (ACLBKW_11420) comGD 2238560..2239006 (-) 447 WP_250026309.1 competence type IV pilus minor pilin ComGD -
  ACLBKW_RS11425 (ACLBKW_11425) comGC 2238999..2239292 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  ACLBKW_RS11430 (ACLBKW_11430) comGB 2239309..2240349 (-) 1041 WP_250026308.1 competence type IV pilus assembly protein ComGB -
  ACLBKW_RS11435 (ACLBKW_11435) comGA 2240330..2241400 (-) 1071 WP_019743634.1 competence type IV pilus ATPase ComGA Machinery gene
  ACLBKW_RS11440 (ACLBKW_11440) - 2241857..2242729 (-) 873 WP_046527023.1 STAS domain-containing protein -
  ACLBKW_RS11450 (ACLBKW_11450) - 2242955..2243335 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACLBKW_RS11455 (ACLBKW_11455) - 2243548..2243790 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  ACLBKW_RS11460 (ACLBKW_11460) - 2243839..2244477 (-) 639 WP_202734344.1 MBL fold metallo-hydrolase -
  ACLBKW_RS11465 (ACLBKW_11465) - 2244638..2244811 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  ACLBKW_RS11470 (ACLBKW_11470) - 2245035..2245349 (-) 315 WP_008342314.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40356.69 Da        Isoelectric Point: 9.0449

>NTDB_id=1094684 ACLBKW_RS11435 WP_019743634.1 2240330..2241400(-) (comGA) [Bacillus altitudinis strain Ba]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRSVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1094684 ACLBKW_RS11435 WP_019743634.1 2240330..2241400(-) (comGA) [Bacillus altitudinis strain Ba]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATAGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGTTAAGACGTGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTAAATGATGAAAGTTTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACTGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATCCAGTTT
GCCAAAAAACATTTTAATCGAAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCGAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACACTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACGATGAATGAACTCGAACAAACAATGGTTGC
CATTGCTGCTCAGAGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGT
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAGTAT
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.888

100

0.649

Multiple sequence alignment