Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACLBKW_RS11375 Genome accession   NZ_CP180232
Coordinates   2234169..2234504 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2229169..2239504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLBKW_RS11355 (ACLBKW_11355) gcvT 2229647..2230744 (-) 1098 WP_212338161.1 glycine cleavage system aminomethyltransferase GcvT -
  ACLBKW_RS11360 (ACLBKW_11360) - 2231304..2232974 (+) 1671 WP_346394190.1 DEAD/DEAH box helicase -
  ACLBKW_RS11365 (ACLBKW_11365) - 2232989..2233786 (+) 798 WP_007501215.1 YqhG family protein -
  ACLBKW_RS11370 (ACLBKW_11370) - 2233971..2234135 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  ACLBKW_RS11375 (ACLBKW_11375) sinR 2234169..2234504 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  ACLBKW_RS11380 (ACLBKW_11380) tasA 2234572..2235372 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  ACLBKW_RS11385 (ACLBKW_11385) sipW 2235431..2236003 (-) 573 WP_017357979.1 signal peptidase I SipW -
  ACLBKW_RS11390 (ACLBKW_11390) tapA 2236053..2236580 (-) 528 WP_304717077.1 amyloid fiber anchoring/assembly protein TapA -
  ACLBKW_RS11395 (ACLBKW_11395) - 2236833..2237159 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  ACLBKW_RS11400 (ACLBKW_11400) - 2237194..2237382 (-) 189 WP_414834365.1 YqzE family protein -
  ACLBKW_RS11405 (ACLBKW_11405) - 2237443..2237826 (-) 384 WP_039964023.1 competence type IV pilus minor pilin ComGG -
  ACLBKW_RS11410 (ACLBKW_11410) comGF 2237823..2238320 (-) 498 WP_250026311.1 competence type IV pilus minor pilin ComGF -
  ACLBKW_RS11415 (ACLBKW_11415) comGE 2238262..2238576 (-) 315 WP_148780034.1 competence type IV pilus minor pilin ComGE -
  ACLBKW_RS11420 (ACLBKW_11420) comGD 2238560..2239006 (-) 447 WP_250026309.1 competence type IV pilus minor pilin ComGD -
  ACLBKW_RS11425 (ACLBKW_11425) comGC 2238999..2239292 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=1094682 ACLBKW_RS11375 WP_017357978.1 2234169..2234504(+) (sinR) [Bacillus altitudinis strain Ba]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1094682 ACLBKW_RS11375 WP_017357978.1 2234169..2234504(+) (sinR) [Bacillus altitudinis strain Ba]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment