Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACMVO4_RS19185 Genome accession   NZ_CP180206
Coordinates   807070..808251 (-) Length   393 a.a.
NCBI ID   WP_272239604.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 802070..813251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS19180 (ACMVO4_19180) cqsS 804960..807014 (+) 2055 WP_171383666.1 hybrid sensor histidine kinase/response regulator Regulator
  ACMVO4_RS19185 (ACMVO4_19185) cqsA 807070..808251 (-) 1182 WP_272239604.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACMVO4_RS19190 (ACMVO4_19190) - 808461..809432 (-) 972 WP_414933006.1 TDT family transporter -
  ACMVO4_RS19195 (ACMVO4_19195) clcA 809550..810950 (-) 1401 WP_414933007.1 H(+)/Cl(-) exchange transporter ClcA -
  ACMVO4_RS19200 (ACMVO4_19200) - 811370..812350 (-) 981 WP_414933008.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43734.99 Da        Isoelectric Point: 7.1194

>NTDB_id=1094533 ACMVO4_RS19185 WP_272239604.1 807070..808251(-) (cqsA) [Vibrio europaeus strain EX1]
MNMLTTRSRLPEFIDRRINYYVSDLINKKDNGRNLVLGKKPHPGDIILQSNDYLALTHHPKIIDAQVNSLLSKKDTAFMS
NVFLHSDGLDKSVEHHLSDYTGFQTCTIAPSGWIANIGLLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNAK
HLRRLIKRNGPGVVLIDSIYSTIGTIAPLQEMVSLAKELDCAIVVDESHSVGVYGPKGAGLLQELGLTDQVDFMTASLAK
TFAYRAGAVWCNNLTGQVVPYVSFPSIFSSAMMSFELDRIDATLSVIKESDQSRKRLMECSEQVREGLANIGYNIRSESQ
IISLETAEKTNTRKVRDFFEDHGVFGSVFCTPATPDNKNILRLSLNSALTSTDIDKILSVAKKAHKNKELYFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1094533 ACMVO4_RS19185 WP_272239604.1 807070..808251(-) (cqsA) [Vibrio europaeus strain EX1]
ATGAATATGTTAACAACGCGATCTCGCCTGCCCGAGTTTATCGACAGACGAATCAACTACTATGTTTCTGACCTAATAAA
TAAAAAAGATAATGGTAGAAACCTAGTTTTAGGTAAGAAGCCGCACCCGGGTGATATCATTTTGCAAAGTAATGATTACC
TTGCGCTGACCCATCACCCTAAAATCATAGACGCTCAAGTTAATTCATTGCTCTCCAAGAAAGACACGGCATTTATGTCT
AATGTGTTTTTACACAGTGATGGACTAGATAAATCCGTTGAGCACCATCTTTCGGATTACACTGGGTTTCAAACTTGTAC
CATTGCCCCATCAGGTTGGATTGCCAACATCGGCCTACTTCAAACCATCTGTGATTCAGAAACCAATGTGTACATCGACT
TCTTTGCGCATATGTCACTTTGGGAAGGGGCTCGCATCGCTGGTGCCAATATCCACCCCTTTATGCATAACAATGCCAAG
CACCTTAGGCGTTTAATCAAACGCAATGGTCCTGGCGTGGTTTTAATTGACTCGATTTACAGTACGATTGGCACCATTGC
ACCACTTCAGGAAATGGTCTCTCTAGCCAAAGAGTTAGATTGTGCGATTGTCGTCGATGAGTCTCACTCGGTCGGTGTTT
ACGGCCCTAAAGGTGCCGGATTACTTCAAGAGCTCGGCCTCACCGATCAGGTCGACTTCATGACTGCCAGCCTAGCAAAA
ACATTTGCTTATCGCGCTGGTGCAGTTTGGTGTAATAACTTAACAGGTCAAGTAGTGCCCTACGTCTCCTTTCCTTCCAT
CTTCAGCTCTGCAATGATGTCGTTCGAGCTCGATAGAATTGATGCCACATTAAGTGTCATTAAGGAAAGTGATCAATCCC
GCAAGCGTCTTATGGAATGTTCAGAGCAAGTTCGTGAAGGTCTTGCAAATATTGGCTATAACATTCGTAGCGAATCTCAA
ATTATTAGCCTAGAAACCGCTGAAAAAACCAATACACGTAAGGTAAGAGATTTTTTTGAAGACCATGGCGTATTCGGTTC
TGTTTTCTGTACACCCGCAACGCCGGATAATAAAAACATCTTACGTCTATCTTTAAATAGTGCTTTAACTAGCACTGATA
TTGATAAGATTTTATCGGTCGCGAAGAAAGCCCACAAAAATAAGGAACTTTATTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.699

98.219

0.547

Multiple sequence alignment