Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   ACMVO4_RS19180 Genome accession   NZ_CP180206
Coordinates   804960..807014 (+) Length   684 a.a.
NCBI ID   WP_171383666.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 799960..812014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS19170 (ACMVO4_19170) - 800577..801707 (+) 1131 WP_414933004.1 exonuclease SbcCD subunit D -
  ACMVO4_RS19175 (ACMVO4_19175) - 801716..804763 (+) 3048 WP_414933005.1 SbcC/MukB-like Walker B domain-containing protein -
  ACMVO4_RS19180 (ACMVO4_19180) cqsS 804960..807014 (+) 2055 WP_171383666.1 hybrid sensor histidine kinase/response regulator Regulator
  ACMVO4_RS19185 (ACMVO4_19185) cqsA 807070..808251 (-) 1182 WP_272239604.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACMVO4_RS19190 (ACMVO4_19190) - 808461..809432 (-) 972 WP_414933006.1 TDT family transporter -
  ACMVO4_RS19195 (ACMVO4_19195) clcA 809550..810950 (-) 1401 WP_414933007.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 684 a.a.        Molecular weight: 78702.74 Da        Isoelectric Point: 5.4489

>NTDB_id=1094532 ACMVO4_RS19180 WP_171383666.1 804960..807014(+) (cqsS) [Vibrio europaeus strain EX1]
MNVVKKIYQYADPNLELVGWMGFFGFPAYFYIWSYMYPQPYENAPLRFFCALLLLGLALRKYTPPPLKRYLPYYYLVTIT
ICLPFFFSFMMFMNEWSTVWAMSFMSSIFLHVLLVHETRVMLLQAMIAIVAAYLFSYGLEHAPAKVETEVVVIWPYIPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASVDVLDSSLPSIKTIKGDKAEIDKQDIERMKEVLS
GADEVIRNGNEAIDLLLTSIDQSRVSHSTFRSYSVEKIARESLASFSYPSDHAKQVVNLHVESDFDYFGSDTLLKYALYN
LLKNSLYYQNGEEFKIAITIRSDHEFNYLYFEDNGIGIEKDKLEFVFKDFYTSGKSSSYGLGLPFCKRVMHAFGGRIKCE
SVLGEWTRFTLKFPRYESQKVTSIKQDILRTKSMLYVGDDVAVKRKLNEFTFYTGALCDVVDFEQARAKEEFEFEYDLIL
LDLETCSEQEYLMLESKLHFTEAKIVMLFAHDGQYHNRFSRFLTFYPKEKAQFLLDVTQSVDSLMFGNVEPNRNLIPKKA
PAVVGKRILIADDNESMRQLTTILLNKQGYQVSQAGDGNEVLSVLSSEQVDLILMDLEMPMLDGLETTTLIRESEEVYAN
VPILGHTGDNRKETLTKIDQAGMNGYLIKPVDKVKLLDKVADYI

Nucleotide


Download         Length: 2055 bp        

>NTDB_id=1094532 ACMVO4_RS19180 WP_171383666.1 804960..807014(+) (cqsS) [Vibrio europaeus strain EX1]
ATGAATGTAGTAAAGAAGATTTATCAGTACGCAGATCCCAACCTTGAGTTAGTCGGGTGGATGGGATTCTTCGGCTTTCC
AGCATACTTCTACATTTGGTCGTACATGTACCCGCAGCCCTATGAAAATGCGCCGTTAAGGTTTTTTTGCGCTTTGCTCC
TGTTAGGGCTCGCGTTAAGAAAATATACGCCTCCTCCACTGAAACGATATCTGCCTTATTACTACTTGGTGACAATCACC
ATCTGCTTACCGTTCTTTTTCTCGTTTATGATGTTTATGAATGAATGGTCGACAGTATGGGCAATGTCCTTCATGTCTTC
GATCTTTCTTCATGTGTTATTAGTCCATGAGACTCGTGTCATGTTGCTGCAGGCGATGATTGCCATCGTAGCGGCCTACT
TGTTTAGCTATGGATTAGAACACGCGCCTGCCAAAGTCGAGACAGAAGTGGTCGTGATTTGGCCTTACATCCCAATTTTC
TTGTTTACTTATGTCTTTGGTAACTTGTTCTATTTCCGTAACCAAGTAGAGCATGAGTCGAAAGTCTCAATTGCCAAGTC
ATTTGGCGCGGGTATCGCTCATGAAATGCGCAATCCGTTAAGCGCACTTAAAGCATCCGTAGACGTACTCGACTCGTCTT
TACCTTCTATCAAGACGATTAAAGGAGACAAAGCAGAGATCGATAAGCAGGATATCGAGCGCATGAAAGAAGTGCTTTCA
GGAGCTGATGAAGTCATACGCAATGGTAACGAAGCGATAGACTTATTGCTTACCTCCATTGACCAGAGCCGAGTATCACA
CTCAACGTTTCGGTCTTATTCTGTCGAGAAGATCGCCAGAGAGTCGCTGGCAAGTTTCTCTTATCCTAGCGATCACGCCA
AACAAGTGGTGAATTTACATGTCGAAAGTGACTTTGACTATTTTGGTAGCGATACGTTATTGAAGTATGCGCTGTACAAT
TTGCTAAAAAACTCACTCTATTACCAGAATGGTGAAGAGTTTAAGATTGCGATCACGATCAGGAGTGATCATGAGTTTAA
CTATCTCTACTTCGAAGACAACGGAATCGGGATAGAGAAAGATAAATTAGAGTTTGTCTTTAAAGATTTTTATACCTCAG
GAAAATCCTCAAGCTACGGGCTTGGATTGCCTTTTTGTAAACGTGTCATGCACGCTTTTGGCGGCAGAATAAAATGTGAG
TCTGTACTCGGAGAGTGGACGCGCTTTACCCTTAAATTTCCTCGCTATGAGTCCCAAAAAGTGACTTCAATCAAACAAGA
TATTCTAAGAACCAAATCAATGCTTTACGTTGGTGATGATGTGGCGGTCAAGCGCAAGTTAAACGAGTTTACTTTCTACA
CTGGGGCGCTGTGTGATGTGGTCGATTTTGAGCAGGCTAGGGCGAAGGAAGAGTTCGAATTTGAATACGATTTGATACTA
CTTGATCTAGAGACATGCAGTGAGCAAGAGTATCTAATGTTGGAGTCTAAGCTCCACTTTACTGAAGCAAAAATCGTGAT
GCTTTTTGCTCATGATGGTCAGTACCATAATCGATTCAGCCGATTCCTTACATTTTATCCAAAGGAGAAAGCGCAATTTC
TGCTTGATGTTACTCAGTCGGTTGATTCGCTTATGTTTGGTAACGTCGAACCTAATCGAAACCTTATTCCGAAAAAAGCA
CCTGCCGTGGTTGGTAAGCGTATCTTGATTGCCGATGACAATGAATCAATGAGGCAGTTAACCACTATCTTGCTCAACAA
ACAGGGCTACCAAGTTTCTCAGGCCGGAGATGGCAATGAGGTGTTGAGTGTTCTGAGCAGTGAACAGGTTGATTTGATTC
TGATGGACCTCGAAATGCCAATGTTGGATGGCTTAGAAACTACGACTCTTATTCGAGAGTCAGAAGAAGTCTACGCTAAC
GTGCCGATTCTTGGGCACACCGGTGATAATCGAAAAGAAACCCTCACTAAAATTGACCAAGCGGGTATGAATGGATACTT
AATTAAGCCTGTCGATAAAGTTAAATTGCTTGATAAAGTAGCGGATTACATCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(568-680)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.564

100

0.499

Multiple sequence alignment