Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACMVO4_RS13065 Genome accession   NZ_CP180205
Coordinates   2845407..2845925 (-) Length   172 a.a.
NCBI ID   WP_272248164.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2840407..2850925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS13035 (ACMVO4_13035) - 2840953..2842083 (+) 1131 WP_195877270.1 hypothetical protein -
  ACMVO4_RS13040 (ACMVO4_13040) - 2842034..2842738 (+) 705 WP_004748167.1 hypothetical protein -
  ACMVO4_RS13045 (ACMVO4_13045) - 2842797..2843339 (-) 543 WP_414931496.1 helix-turn-helix domain-containing protein -
  ACMVO4_RS13050 (ACMVO4_13050) - 2843305..2844345 (-) 1041 WP_195877271.1 tyrosine-type recombinase/integrase -
  ACMVO4_RS13060 (ACMVO4_13060) - 2844866..2845342 (+) 477 WP_171383282.1 RDD family protein -
  ACMVO4_RS13065 (ACMVO4_13065) luxS 2845407..2845925 (-) 519 WP_272248164.1 S-ribosylhomocysteine lyase Regulator
  ACMVO4_RS13070 (ACMVO4_13070) - 2845950..2846549 (-) 600 WP_069667478.1 hypothetical protein -
  ACMVO4_RS13075 (ACMVO4_13075) gshA 2846559..2848127 (-) 1569 WP_414931498.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.87 Da        Isoelectric Point: 4.7297

>NTDB_id=1094517 ACMVO4_RS13065 WP_272248164.1 2845407..2845925(-) (luxS) [Vibrio europaeus strain EX1]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRNHLNGDTVEIIDISP
MGCRTGFYMSLIGTPQEQQVADAWLSAMQDVLKVESQKKIPELNEYQCGTAAMHSLDEAKQIAEAILAAGVSVNKNDELA
LPEEMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1094517 ACMVO4_RS13065 WP_272248164.1 2845407..2845925(-) (luxS) [Vibrio europaeus strain EX1]
ATGCCGTTACTAGATAGTTTTACCGTTGACCACACACGTATGAATGCACCTGCTGTCCGAGTCGCAAAGACCATGACGAC
ACCAAAAGGTGACACCATTACTGTGTTTGATCTGCGTTTTACCGCACCAAACAAAGATATCTTGTCAGAAAGAGGGATTC
ATACTCTCGAGCACCTTTACGCGGGCTTTATGCGTAATCACCTGAATGGGGATACGGTAGAAATTATCGATATTTCTCCA
ATGGGCTGTCGTACGGGCTTTTACATGAGCCTGATTGGTACGCCACAAGAGCAGCAAGTCGCCGACGCTTGGCTATCTGC
AATGCAAGACGTATTAAAAGTAGAGAGCCAGAAAAAAATCCCAGAGCTTAATGAGTATCAATGTGGTACGGCGGCGATGC
ACTCGCTAGATGAAGCGAAACAGATTGCTGAAGCTATTCTTGCAGCAGGAGTTTCGGTTAACAAAAATGATGAGCTTGCG
CTGCCAGAAGAGATGCTAAAAGAGCTTAAAATAGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment