Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACMVO4_RS06775 Genome accession   NZ_CP180205
Coordinates   1452992..1454416 (-) Length   474 a.a.
NCBI ID   WP_414932177.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1447992..1459416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS06755 (ACMVO4_06755) - 1449420..1450625 (+) 1206 WP_069666185.1 HD-GYP domain-containing protein -
  ACMVO4_RS06760 (ACMVO4_06760) cdd 1450673..1451560 (-) 888 WP_069667244.1 cytidine deaminase -
  ACMVO4_RS06765 (ACMVO4_06765) - 1451804..1452481 (-) 678 WP_069666186.1 CidB/LrgB family autolysis modulator -
  ACMVO4_RS06770 (ACMVO4_06770) - 1452481..1452846 (-) 366 WP_069666187.1 CidA/LrgA family protein -
  ACMVO4_RS06775 (ACMVO4_06775) sbcB 1452992..1454416 (-) 1425 WP_414932177.1 exodeoxyribonuclease I Machinery gene
  ACMVO4_RS06780 (ACMVO4_06780) - 1454693..1455244 (+) 552 WP_272283515.1 VRR-NUC domain-containing protein -
  ACMVO4_RS06785 (ACMVO4_06785) - 1455365..1455733 (+) 369 WP_272283514.1 hypothetical protein -
  ACMVO4_RS06790 (ACMVO4_06790) - 1455803..1457176 (-) 1374 WP_414932178.1 L-cystine transporter -
  ACMVO4_RS06795 (ACMVO4_06795) - 1457366..1458082 (-) 717 WP_414932285.1 oxidoreductase -
  ACMVO4_RS06800 (ACMVO4_06800) - 1458572..1459183 (+) 612 WP_414932179.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54656.01 Da        Isoelectric Point: 4.9045

>NTDB_id=1094510 ACMVO4_RS06775 WP_414932177.1 1452992..1454416(-) (sbcB) [Vibrio europaeus strain EX1]
MQQEHQPTFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQTAESQGLSEP
EFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGVNWPENDEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGKECNY
TSWIVPVAWHPTNQNAAICVDLAKDPQALLDLDTEQLNERLYTKRSELAPEELPVPVKLIHLNKCPILAPAKTLTAENAE
KIGIDREKCLENLALLRKHPEIREKLIGVYGIEREYEKSNDVDSMLYDGFFSPADKAAMNIIRETDPNNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQRWATHCRDYFESRIEDYMLNLENLVHEHESDQKKIAILKSIYQYVQKRVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=1094510 ACMVO4_RS06775 WP_414932177.1 1452992..1454416(-) (sbcB) [Vibrio europaeus strain EX1]
ATGCAGCAAGAGCATCAGCCTACGTTTTTCTTTTTTGATTACGAGACGTGGGGAACTAGCCCAGCGAAAGATCGACCGTG
TCAGTTTGCGGGTGTTCGTACCGATATGGACTTCAATATTATTGGTGAACCTCTTGTTATTTATTGTCAGCCGCCTGCGG
ATTATCTCCCATCACCGGAAGCCGCGTTGATTACAGGTATTACTCCACAAACTGCGGAAAGCCAAGGTCTTTCTGAGCCC
GAGTTCATCGCTAAGATTCACGAACAACTGGCCACACCAAACACCATTAGCTTGGGCTATAACAGTATCCGTTTCGATGA
TGAGGTAACGCGCTACACTTGTTACCGAAACTTTATCGATCCTTATGCGTGGAGTTGGCAAAACGGTAACTCTCGCTGGG
ATTTGCTTGATGTCATGCGTGCTTGCTATGCGCTTCGTCCAGAAGGGGTAAACTGGCCTGAGAACGATGAAGGTTTTATC
AGCTTTAAGCTTGAGCATTTATCTGTTGCCAATGGCATTGAACATGAGAACGCACACGATGCTATGGCGGATGTTATCGC
GACGATTGAAATGGCTAAAAAGGTGAAAGCGGCTCAACCAAAACTGTTTGATTACTTCCTAAGCATGCGTCACAAGCGCA
AGTTGAATGAACTGATCGACATCGTGAACATGACACCCTTGATGCATGTTTCAGGAATGTTGGGTAAAGAGTGTAATTAC
ACCAGTTGGATTGTTCCTGTTGCTTGGCACCCGACGAATCAAAACGCCGCTATTTGTGTCGATTTGGCGAAAGACCCGCA
AGCCCTATTGGATTTGGATACCGAGCAACTTAATGAGCGACTGTATACTAAGCGTTCTGAGCTAGCACCTGAGGAGCTTC
CAGTTCCTGTTAAGCTTATCCACCTCAATAAGTGCCCTATTCTCGCTCCAGCGAAAACACTCACTGCTGAAAACGCAGAG
AAAATTGGTATTGACCGAGAGAAATGTTTGGAGAACTTAGCTCTGCTCCGCAAGCACCCTGAAATTCGTGAAAAGCTGAT
TGGTGTTTATGGCATTGAGCGGGAATATGAAAAGAGCAATGACGTCGATAGCATGCTCTATGATGGGTTCTTCTCTCCGG
CAGATAAAGCAGCGATGAACATCATTCGTGAAACTGACCCTAACAACCTATCCGCGCTTGATATTTCATTTAGTGATGAC
CGTATTGCGCCACTGCTGTTCCGCTATCGTGCACGACACTTCCCATGGACGCTCGATGAGTCAGAACAACAACGATGGGC
AACGCACTGTCGTGACTACTTCGAAAGTCGTATTGAAGACTACATGCTAAATTTGGAAAACTTAGTTCACGAACATGAAA
GTGACCAAAAGAAAATCGCTATTTTAAAATCTATCTACCAATACGTACAAAAGCGAGTATCCTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.406

99.367

0.789

Multiple sequence alignment