Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACMDW7_RS15245 Genome accession   NZ_CP180191
Coordinates   3374752..3376287 (-) Length   511 a.a.
NCBI ID   WP_377302918.1    Uniprot ID   -
Organism   Piscinibacterium candidicorallinum strain LMG 29480     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369752..3381287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMDW7_RS15215 (ACMDW7_15215) - 3369911..3370393 (-) 483 WP_377302927.1 hypothetical protein -
  ACMDW7_RS15220 (ACMDW7_15220) pdeM 3370566..3371252 (+) 687 WP_377302926.1 ligase-associated DNA damage response endonuclease PdeM -
  ACMDW7_RS15225 (ACMDW7_15225) - 3371279..3372478 (-) 1200 WP_377302924.1 methyltransferase -
  ACMDW7_RS15230 (ACMDW7_15230) hprK 3372475..3373431 (-) 957 WP_377302922.1 HPr(Ser) kinase/phosphatase -
  ACMDW7_RS15235 (ACMDW7_15235) - 3373478..3373948 (-) 471 WP_054126232.1 PTS sugar transporter subunit IIA -
  ACMDW7_RS15240 (ACMDW7_15240) hpf 3374160..3374495 (-) 336 WP_377302920.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACMDW7_RS15245 (ACMDW7_15245) rpoN/rpoN1 3374752..3376287 (-) 1536 WP_377302918.1 RNA polymerase factor sigma-54 Machinery gene
  ACMDW7_RS15250 (ACMDW7_15250) lptB 3376309..3377079 (-) 771 WP_377304236.1 LPS export ABC transporter ATP-binding protein -
  ACMDW7_RS15255 (ACMDW7_15255) lptA 3377121..3377753 (-) 633 WP_377302916.1 lipopolysaccharide transport periplasmic protein LptA -
  ACMDW7_RS15260 (ACMDW7_15260) lptC 3377750..3378361 (-) 612 WP_377302914.1 LPS export ABC transporter periplasmic protein LptC -
  ACMDW7_RS15265 (ACMDW7_15265) - 3378373..3378924 (-) 552 WP_377302912.1 KdsC family phosphatase -
  ACMDW7_RS15270 (ACMDW7_15270) - 3378924..3379907 (-) 984 WP_377302910.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55281.89 Da        Isoelectric Point: 5.2903

>NTDB_id=1094377 ACMDW7_RS15245 WP_377302918.1 3374752..3376287(-) (rpoN/rpoN1) [Piscinibacterium candidicorallinum strain LMG 29480]
MKPTLGLKLSQSLTLTPQLQQSIKLLQMSTLELNEEIDRALDDNPLLERLDDPQGAMSISVSGSGRLLESGPAPMSDAKP
GSEGSTDGPASGESNLGGDAGEPGTDLWGADSATMSWGNPGAPEDDDREGQQLSDMGGGLREHLLEQLAATRVGASDRVL
AAVIIDALDDNGYLLDEPEELVDAACALLGEADRIEVLDDFPAALKLVQSFDPPGVGARSAAECLALQILHCDAKSPLRK
QDRKLVQLALHLVRNHLQAVASRDFTRLRRLLRVDDEALRAAVNIIKTLDPHPGSRWASSAASHVVPDVRVIKTREGWQA
QLNASVMPKLAVNEAYARVLKEQRGKLGEGGAALSARLQEARWMIKNVEQRFDTILRVSQAIVERQKAFFTHGEVAMRPL
VLREIADILGLHESTISRVTTQKFMATPFGTFELKYFFGSSLATEAGGTASSTAIRALIKQLIAAENTNEPLSDSRIAEL
LAEQGVVVARRTVAKYREAMKIAPVNLRKHL

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1094377 ACMDW7_RS15245 WP_377302918.1 3374752..3376287(-) (rpoN/rpoN1) [Piscinibacterium candidicorallinum strain LMG 29480]
ATGAAGCCCACCCTCGGTCTCAAGCTCTCCCAGAGTCTCACGCTTACGCCGCAGCTGCAGCAGTCCATCAAGCTGCTGCA
GATGTCGACGCTCGAGCTGAACGAGGAGATCGATCGCGCACTCGATGACAACCCCTTGCTGGAGCGCCTGGACGACCCCC
AGGGTGCGATGAGCATTTCCGTCAGCGGCTCGGGGCGCCTGCTTGAAAGCGGGCCGGCGCCGATGTCGGACGCCAAGCCT
GGCAGCGAAGGCTCCACGGACGGGCCAGCGTCGGGCGAGTCCAATCTGGGTGGGGATGCGGGCGAGCCGGGCACGGACCT
GTGGGGCGCGGACAGCGCCACAATGAGCTGGGGCAACCCCGGCGCGCCGGAGGACGATGATCGCGAAGGACAGCAGCTCA
GCGACATGGGCGGCGGATTGCGCGAACATCTCCTGGAGCAGTTGGCCGCAACCCGCGTGGGTGCCAGTGATCGCGTGCTG
GCCGCAGTCATCATCGATGCGCTGGACGACAACGGCTATCTGCTGGATGAGCCCGAAGAGCTGGTCGATGCGGCCTGCGC
GCTGCTCGGGGAGGCCGATCGGATCGAAGTGCTGGACGACTTTCCCGCAGCGCTGAAGCTTGTGCAGAGCTTTGATCCGC
CAGGCGTCGGTGCGCGCAGCGCGGCCGAATGCCTTGCGCTGCAGATCCTGCACTGCGATGCGAAGAGTCCGTTGCGCAAG
CAGGACCGCAAGCTGGTTCAGCTGGCGCTTCACCTGGTACGCAACCATCTGCAGGCCGTGGCATCACGCGACTTCACGCG
TCTGCGTCGTCTGCTGCGCGTGGATGACGAGGCGCTGCGCGCTGCGGTCAACATCATCAAGACGCTGGATCCGCATCCGG
GCTCACGCTGGGCATCGAGCGCGGCCTCCCATGTGGTCCCGGATGTGCGCGTGATCAAGACGCGCGAAGGCTGGCAGGCG
CAGCTCAACGCGTCGGTCATGCCGAAGCTCGCCGTCAACGAGGCCTACGCGCGCGTGCTCAAGGAGCAGCGCGGCAAGCT
GGGCGAGGGTGGCGCTGCGCTGTCCGCGCGTCTTCAGGAAGCGCGCTGGATGATCAAGAACGTCGAGCAGCGCTTCGACA
CGATCCTGCGCGTGTCGCAGGCGATCGTCGAGCGGCAGAAGGCCTTCTTCACGCATGGCGAGGTGGCGATGCGACCGCTG
GTGCTGCGCGAGATTGCCGACATTCTCGGTCTGCACGAATCGACGATCTCGCGCGTGACCACCCAAAAGTTCATGGCCAC
GCCTTTTGGCACCTTCGAGCTCAAGTACTTCTTCGGCTCCAGCCTGGCCACCGAAGCGGGCGGTACCGCTTCGTCTACAG
CGATCCGGGCACTCATAAAGCAGCTGATCGCTGCCGAAAACACCAATGAGCCCCTGTCAGACAGCCGGATTGCTGAACTT
CTGGCCGAGCAGGGCGTCGTAGTTGCACGGCGCACGGTTGCGAAGTACCGTGAAGCCATGAAAATTGCTCCAGTCAACCT
GAGAAAGCATCTATGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(354-509)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(139-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.359

100

0.544

Multiple sequence alignment