Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ACMHYC_RS17145 Genome accession   NZ_CP180027
Coordinates   3605218..3607443 (+) Length   741 a.a.
NCBI ID   WP_227556547.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3600218..3612443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS17125 (ACMHYC_17125) - 3601673..3602011 (-) 339 WP_005226516.1 tRNA-binding protein -
  ACMHYC_RS17130 (ACMHYC_17130) - 3602583..3602927 (-) 345 WP_199949784.1 hypothetical protein -
  ACMHYC_RS17135 (ACMHYC_17135) gspG 3603188..3603799 (-) 612 WP_199949783.1 type II secretion system major pseudopilin GspG -
  ACMHYC_RS17140 (ACMHYC_17140) gspF 3603799..3605004 (-) 1206 WP_005280799.1 type II secretion system inner membrane protein GspF -
  ACMHYC_RS17145 (ACMHYC_17145) priA 3605218..3607443 (+) 2226 WP_227556547.1 primosomal protein N' Machinery gene
  ACMHYC_RS17150 (ACMHYC_17150) - 3607546..3609363 (+) 1818 WP_414659467.1 cation:proton antiporter -
  ACMHYC_RS17155 (ACMHYC_17155) hslO 3609481..3610356 (+) 876 WP_005280808.1 Hsp33 family molecular chaperone HslO -
  ACMHYC_RS17160 (ACMHYC_17160) - 3610475..3611086 (+) 612 WP_199949780.1 LysE family translocator -
  ACMHYC_RS17165 (ACMHYC_17165) - 3611227..3612171 (+) 945 WP_199949779.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84055.84 Da        Isoelectric Point: 8.6608

>NTDB_id=1094103 ACMHYC_RS17145 WP_227556547.1 3605218..3607443(+) (priA) [Acinetobacter courvalinii isolate 2024CK-01798]
MPTQNSSTVVYRIRVAIPVYLYDTFDYTVSAAQYAQAQVGARVAISFGRQNLVGIITEKVNPDEVFTGQFKLKAITELLD
QDAILDQQVLTLLTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKITPHDDPASLLKRSQKQYDAYQVLKLHPHG
TTENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNEDQKKAIQHILKAQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVSRFKSRFHCDIALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PNLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLELLELNQRAGVAVLPKMHV
VDLKIAKKQHGLSQTLIQQIKQTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYERIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADRKIAML
PPYRYTVLVRVESKDRDYSQHFLAEIAQQLRTMAGDLVDIWGPIPAPMERKAGRYRAHMVILSTDRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1094103 ACMHYC_RS17145 WP_227556547.1 3605218..3607443(+) (priA) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGCCGACCCAAAATTCTAGCACTGTTGTTTACCGTATTCGCGTTGCCATACCGGTGTATCTGTATGATACCTTTGATTA
TACGGTGAGCGCAGCGCAATACGCTCAGGCACAGGTTGGCGCGCGTGTTGCGATTTCATTTGGGCGGCAAAACCTGGTCG
GGATCATCACTGAAAAAGTCAATCCAGACGAAGTATTTACCGGACAGTTCAAACTTAAAGCCATAACGGAATTACTCGAT
CAGGACGCGATTTTAGACCAACAAGTTTTAACTTTGTTGACATGGTCCGCCCAATATTATCAATTTCCGATTGGCGAGGT
CATGCAAAGTGCCTTACCCACTTTACTCAGACAAGGTCGTGCCTTAGATATCCTGTTTCATCTATGGAAAATCACACCCC
ATGATGACCCAGCCTCATTATTAAAACGTTCGCAAAAACAATATGACGCCTATCAGGTGTTAAAACTGCATCCGCATGGC
ACCACTGAAAATGTCTTAAACCTGAGCGGGGTGGAAACCTCGACCCTGAAAGCACTGGAAAAGAAAGGCCTGGTTGAGTG
CTGTCTAGAGCCACATGATTTTACCCCGACACCGGTGCAACTGGCGCAAGTTCCGTTAACACCGAATGAAGACCAGAAAA
AAGCCATTCAACACATTCTCAAGGCACAGCATCATTATCAGGCTTTTTTACTCGATGGTTTGACGGGTAGCGGCAAAACT
GAAGTTTATCTGCAAGTGATGCATGAGGTATTAAAACAAGGCAAGCAAGTACTGGTGCTGGTGCCAGAAATTGGTCTCAC
CCCGCAAACCGTTTCACGTTTTAAGTCACGCTTTCATTGTGATATTGCCTTACTGCATTCAGGGCTAAATGACTCAAAAC
GGTTACAGGCATGGCAACATGCACAAACTGGCAAAGCCTCGATCATAATTGGGACACGCTCTGCAATTTATACTCCATTG
CCCAATCTGGGGCTGATCATCCTGGATGAAGAACATGACCTCTCGTATAAACAGCAAGAAGGCTTCCGTTACCATACCCG
TGATGTTGCCTTATATCGCGGACATTTGCAGAACTGTCCGGTGATACTTGGCTCTGCAACGCCAAGTATCGATAGTTATC
ATCTGGTTGAATCTGGAAAGCTGGAACTACTTGAACTGAATCAACGTGCAGGTGTGGCGGTTTTACCGAAAATGCATGTG
GTGGATTTAAAGATTGCAAAAAAGCAGCATGGTCTCAGCCAGACCTTGATTCAGCAAATCAAGCAGACCTTAGAGCGTAA
AGAACAAGTCCTGATCTTTTTAAACCGACGCGGTTATGCGCCGATCCTGATGTGTGAAAGCTGCGGCTGGCAAGCCAACT
GCCCACATTGTGATGCGCACTTTACCCTGCATTCCCAGCCTTACCATTATTTGCATTGTCATCATTGCGGAACCATCAAC
CGTTTGCCAGATCATTGTCCTGCATGCCAGAAACAGAGTTTAAAAACCATTGGAGCAGGAACGGCAAAGCTTGAGGAACA
TTTACAGGAACTGTTCCCGCACAATGAAGTGATACGGGTTGACCGTGACAGTACCAGCCGGGTCGGTAGCTGGCAGAAAA
TTTATGAGCGGATCCAGCAAAACAAACCAAGTATCTTGCTGGGCACGCAAATGCTGGCGAAAGGTCATCATTTCCCGCAT
GTAACGCTGGTTGCGATTCTGGATATTGATGCAGGCCTGCTCAGTGTTGATCCGCGTGCGCCTGAACGGACAGCTCAATT
GATTGTGCAGGTGGCCGGACGTGCTGGACGTGGTGAGCATAAAGGCAGTGTCTATTTACAAAGTTTACGTCCTGACCATC
CAATGCTAACCACGCTGATTGAGCATGATTATCGTACCGTTGCCAAACAAATGCTGGCTGATCGCAAAATTGCCATGCTG
CCGCCTTATCGTTATACGGTTCTGGTTCGGGTGGAATCGAAAGATCGCGACTATAGCCAACACTTTCTGGCCGAGATTGC
CCAGCAACTTAGAACAATGGCTGGCGATCTGGTTGATATCTGGGGGCCAATCCCTGCTCCTATGGAGCGTAAAGCAGGCC
GTTATCGTGCGCACATGGTGATTTTATCTACCGATCGGGCAAAACTGCACTTTTATTTGCGTCAATGGTGGCAACAAGTG
GTACATTTACCACGACAGCATCAACTCAGGCTTTCCATTGATGTTGATCCACAAGAGTTTAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

83.356

99.73

0.831

Multiple sequence alignment