Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ACMHYC_RS16615 Genome accession   NZ_CP180027
Coordinates   3505932..3506819 (-) Length   295 a.a.
NCBI ID   WP_199949832.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3500932..3511819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS16595 (ACMHYC_16595) miaB 3502146..3503597 (+) 1452 WP_414659450.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACMHYC_RS16600 (ACMHYC_16600) - 3503638..3504711 (+) 1074 WP_032870775.1 PhoH family protein -
  ACMHYC_RS16605 (ACMHYC_16605) ybeY 3505011..3505496 (+) 486 WP_005280578.1 rRNA maturation RNase YbeY -
  ACMHYC_RS16610 (ACMHYC_16610) - 3505508..3505807 (+) 300 WP_199949833.1 antibiotic biosynthesis monooxygenase family protein -
  ACMHYC_RS16615 (ACMHYC_16615) tonB2 3505932..3506819 (-) 888 WP_199949832.1 energy transducer TonB Machinery gene
  ACMHYC_RS16620 (ACMHYC_16620) - 3507064..3507738 (+) 675 WP_199949831.1 hypothetical protein -
  ACMHYC_RS16625 (ACMHYC_16625) - 3507941..3508645 (+) 705 WP_005226683.1 DUF3108 domain-containing protein -
  ACMHYC_RS16630 (ACMHYC_16630) - 3508734..3509309 (+) 576 WP_005226682.1 xanthine phosphoribosyltransferase -
  ACMHYC_RS16635 (ACMHYC_16635) - 3509358..3510182 (-) 825 WP_199949830.1 YwqG family protein -
  ACMHYC_RS16640 (ACMHYC_16640) thyA 3510354..3511196 (+) 843 WP_199949829.1 thymidylate synthase -
  ACMHYC_RS16645 (ACMHYC_16645) - 3511217..3511726 (+) 510 WP_199949828.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33267.85 Da        Isoelectric Point: 9.0913

>NTDB_id=1094102 ACMHYC_RS16615 WP_199949832.1 3505932..3506819(-) (tonB2) [Acinetobacter courvalinii isolate 2024CK-01798]
MWNKINFRSALSGYWWQDPLFVGAVALAMLLHGAVLAIHFSMPSPADTSTKEIAVTVRPSADKVKEADFLAQADQQGSGD
FRQAHRMSSDMPAPMQADATTGESTLESLEKVQQKRELKFEEKVLMTVLSWQKQAEQSERKKTLDELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDEAKQQRLAGEVRLMVILNAEGGIRAIRL
IESSGYSVLDEAAKASVRRGAPFGAFDAAMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=1094102 ACMHYC_RS16615 WP_199949832.1 3505932..3506819(-) (tonB2) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGTGGAATAAAATAAATTTTCGTTCAGCGCTGTCTGGTTATTGGTGGCAAGATCCGCTTTTTGTAGGGGCGGTTGCTTT
GGCGATGCTGCTGCATGGTGCTGTGCTGGCTATTCATTTTTCCATGCCATCGCCTGCAGATACCTCAACCAAAGAAATTG
CAGTCACTGTGCGTCCGAGTGCGGATAAAGTCAAAGAGGCGGATTTTCTGGCCCAGGCGGATCAACAGGGTTCGGGTGAT
TTCCGTCAAGCGCATCGTATGTCCAGTGATATGCCAGCGCCCATGCAGGCTGATGCGACAACAGGCGAGTCTACACTAGA
AAGTCTGGAAAAAGTTCAGCAGAAACGTGAGCTCAAGTTTGAAGAAAAAGTATTAATGACAGTTTTAAGCTGGCAAAAAC
AGGCAGAACAAAGCGAACGTAAAAAGACGCTAGATGAGTTACAAAGCCAGTTTCAGGCCAAGGCCGCGATGGTGGCGAGC
TTGGAAGCACAATATTTACAACGACAGCAAAATTTTAGCCGCAAACAACGCATTAAAACGGTTGATGGCATTCAAGCCAA
ACAAGATGCATCCGCTGCCTATCTGGATAAGTTCCGTCAAAAAGTCGAATTGTATGGCAACCGTTATTATCCGGATGAGG
CAAAGCAGCAACGTTTAGCCGGAGAAGTGCGTTTAATGGTGATTCTGAATGCGGAGGGCGGGATTCGGGCGATTCGTTTA
ATCGAAAGTTCGGGGTATTCCGTTCTGGATGAAGCTGCTAAAGCCTCGGTACGTCGTGGCGCACCCTTTGGCGCATTCGA
TGCAGCGATGAAAAAGGATATTTCCGAGTTAAGGATTATACGGACCTGGCGTTTTGACCCCGTTGATGCAGAGTTTGAAG
TGCATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

80.142

95.593

0.766

Multiple sequence alignment