Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACMHYC_RS02575 Genome accession   NZ_CP180027
Coordinates   542569..543252 (-) Length   227 a.a.
NCBI ID   WP_199948976.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 537569..548252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS02540 (ACMHYC_02540) mlaE 537983..538762 (+) 780 WP_005227460.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACMHYC_RS02545 (ACMHYC_02545) - 538762..539436 (+) 675 WP_005282943.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACMHYC_RS02550 (ACMHYC_02550) - 539456..540088 (+) 633 WP_005227457.1 phospholipid-binding protein MlaC -
  ACMHYC_RS02555 (ACMHYC_02555) - 540100..540387 (+) 288 WP_032873778.1 lipid asymmetry maintenance protein MlaB -
  ACMHYC_RS02560 (ACMHYC_02560) - 540436..541452 (-) 1017 WP_005227453.1 CorA family divalent cation transporter -
  ACMHYC_RS02565 (ACMHYC_02565) - 541625..542209 (+) 585 WP_032868638.1 TIGR00730 family Rossman fold protein -
  ACMHYC_RS02570 (ACMHYC_02570) - 542220..542615 (+) 396 WP_199948977.1 NUDIX hydrolase -
  ACMHYC_RS02575 (ACMHYC_02575) comF 542569..543252 (-) 684 WP_199948976.1 ComF family protein Machinery gene
  ACMHYC_RS02580 (ACMHYC_02580) recG 543245..545290 (-) 2046 WP_199948975.1 ATP-dependent DNA helicase RecG -
  ACMHYC_RS02585 (ACMHYC_02585) - 545309..546127 (+) 819 WP_199948974.1 NAD-dependent epimerase/dehydratase family protein -
  ACMHYC_RS02590 (ACMHYC_02590) - 546254..547234 (+) 981 WP_199948973.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25984.05 Da        Isoelectric Point: 8.6000

>NTDB_id=1094083 ACMHYC_RS02575 WP_199948976.1 542569..543252(-) (comF) [Acinetobacter courvalinii isolate 2024CK-01798]
MFKLLGRSAQQLFDYFTPCSLCDIGMKRHFGVCQSCWQQLPWLKQSIERNQQQIMVACHYQYPIDRIIQQFKYEQKLHHQ
RLLNGLLLQSRLPKVHAIVPMPISTDRLVERGFNQSLLLAQALSEHLNIPVWQPVQRLAQHSQKGLSRLERLENIEQQFV
AAAPNQIRYRKVLIVDDVVTTGSSITALSQVLQQLGCQQVYSLCLAAAQHQEINSNAAADTTESPLL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1094083 ACMHYC_RS02575 WP_199948976.1 542569..543252(-) (comF) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGTTTAAATTATTGGGCAGATCAGCACAGCAGCTATTTGATTATTTTACCCCATGTAGCCTGTGTGATATTGGCATGAA
ACGGCACTTCGGTGTTTGTCAAAGCTGCTGGCAACAATTGCCCTGGCTCAAGCAAAGCATTGAACGCAATCAACAGCAAA
TCATGGTGGCCTGCCATTATCAGTACCCGATTGACCGGATTATCCAACAGTTTAAATATGAGCAGAAACTGCATCATCAA
CGTCTATTGAATGGCTTGCTATTGCAATCCAGACTACCCAAAGTGCATGCCATTGTGCCCATGCCTATTTCAACAGATCG
TCTAGTGGAGCGTGGTTTTAACCAGAGCCTGCTCTTGGCACAAGCCTTAAGTGAGCACTTGAACATTCCCGTCTGGCAAC
CGGTCCAGCGCTTGGCCCAGCATTCTCAAAAAGGATTAAGCCGCCTGGAACGGCTAGAAAATATTGAACAGCAATTTGTT
GCTGCTGCACCGAACCAGATTCGCTATCGCAAGGTCCTCATTGTCGATGATGTGGTCACCACAGGCAGTTCGATTACTGC
ATTATCTCAGGTGCTGCAACAACTGGGCTGCCAACAGGTCTATAGTCTGTGTCTGGCAGCCGCGCAGCATCAGGAAATTA
ATTCAAATGCTGCTGCTGACACCACGGAATCACCACTTCTTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(155-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

66.827

91.63

0.612
  comF Acinetobacter baumannii D1279779

66.346

91.63

0.608

Multiple sequence alignment