Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACMG4O_RS15615 Genome accession   NZ_CP179934
Coordinates   3341487..3342866 (+) Length   459 a.a.
NCBI ID   WP_414434869.1    Uniprot ID   -
Organism   Alloalcanivorax venustensis strain A6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336487..3347866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMG4O_RS15595 (ACMG4O_15595) - 3337161..3337979 (+) 819 WP_194856318.1 outer membrane protein assembly factor BamD -
  ACMG4O_RS15600 (ACMG4O_15600) - 3337986..3339611 (-) 1626 WP_414434120.1 NAD+ synthase -
  ACMG4O_RS15605 (ACMG4O_15605) - 3339690..3339938 (+) 249 WP_142949769.1 PP0621 family protein -
  ACMG4O_RS15610 (ACMG4O_15610) - 3339928..3341484 (+) 1557 WP_414434121.1 sensor histidine kinase -
  ACMG4O_RS15615 (ACMG4O_15615) pilR 3341487..3342866 (+) 1380 WP_414434869.1 sigma-54-dependent transcriptional regulator Regulator
  ACMG4O_RS15620 (ACMG4O_15620) - 3342839..3343918 (-) 1080 WP_414434122.1 NAD(P)/FAD-dependent oxidoreductase -
  ACMG4O_RS15625 (ACMG4O_15625) - 3343991..3344575 (-) 585 WP_194856343.1 GspH/FimT family pseudopilin -
  ACMG4O_RS15630 (ACMG4O_15630) tnpA 3344693..3345076 (+) 384 WP_414433629.1 IS66-like element accessory protein TnpA -
  ACMG4O_RS15635 (ACMG4O_15635) tnpB 3345073..3345408 (+) 336 WP_414433628.1 IS66 family insertion sequence element accessory protein TnpB -
  ACMG4O_RS15640 (ACMG4O_15640) tnpC 3345484..3347049 (+) 1566 WP_414434123.1 IS66 family transposase -
  ACMG4O_RS15645 (ACMG4O_15645) - 3347179..3347592 (-) 414 WP_323745375.1 type IV pilin protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50844.88 Da        Isoelectric Point: 5.3012

>NTDB_id=1094020 ACMG4O_RS15615 WP_414434869.1 3341487..3342866(+) (pilR) [Alloalcanivorax venustensis strain A6]
MTDKTPRVLVVDDEADLRELLVITLGRMKLDATAADSLGAARRLLDSDRFDLCLTDMNLGDGTGLDLLRHAAQTAPDMPV
AVITAYGNMDVATDAMKLGAYDFIAKPVALDRLRQLIEDGLGISRTEKAGDGGGEEDTLVGQGPAMQRLKQQIRKLARSQ
APIYISGESGSGKERVARLIHALGPRREKPFVAVNCGAIPSELMESEFFGHRKGSFTGAVEDRKGLFREADGGTLFLDEV
ADLPLHMQVKLLRAIQEKTVRPVGESKEFAVNLRILCATHRDLGEEMSAGRFRQDLYYRLNVIEAHVPPLRERHEDIPVL
VEHILERLGEAWETRPPAVSERAMSALAGYRFPGNVRELENTLERALTLCDGEMIEPEHLHLPSDDGPQPATGNGGGRHP
QLPLEDYLQEIEKQEILRALDTTHWNRTAAAKKLGMTFRSLRYRLKKLELDQDGAPDSE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1094020 ACMG4O_RS15615 WP_414434869.1 3341487..3342866(+) (pilR) [Alloalcanivorax venustensis strain A6]
ATGACCGATAAGACTCCTCGTGTTCTGGTTGTTGACGACGAAGCGGATCTGCGCGAACTGCTCGTCATCACCCTGGGGCG
GATGAAACTGGATGCCACCGCGGCCGACTCGCTCGGCGCCGCGCGGCGCCTGCTCGACAGCGACCGCTTCGACCTCTGCC
TGACCGATATGAACCTGGGCGACGGCACCGGCCTGGACCTGCTGCGCCACGCCGCCCAGACCGCCCCGGACATGCCGGTG
GCGGTGATCACCGCCTACGGCAACATGGACGTGGCCACCGACGCGATGAAGCTGGGCGCCTACGACTTCATCGCCAAACC
GGTGGCGCTGGACCGCCTGCGGCAGTTGATCGAGGACGGCCTGGGCATCAGCCGCACCGAGAAAGCCGGCGACGGCGGCG
GGGAAGAAGACACCCTGGTCGGCCAGGGGCCGGCCATGCAGCGCCTCAAGCAGCAGATCCGCAAACTGGCGCGCAGCCAG
GCGCCGATCTACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCGCGTGGCGCGTTTGATCCACGCCCTGGGCCCGCGCCG
GGAAAAGCCGTTCGTGGCGGTCAACTGCGGCGCGATTCCCTCGGAACTGATGGAGAGCGAGTTCTTCGGCCACCGCAAGG
GCAGCTTCACCGGCGCCGTGGAAGACCGCAAAGGCCTGTTCCGCGAAGCGGACGGCGGCACCCTGTTCCTCGACGAAGTG
GCCGACCTGCCGCTGCACATGCAGGTGAAACTGCTGCGCGCGATTCAGGAAAAGACGGTGCGCCCGGTGGGCGAGTCCAA
GGAGTTCGCGGTTAACCTGCGCATTCTCTGCGCCACCCACCGGGATCTGGGCGAGGAAATGAGCGCCGGCCGCTTCCGCC
AGGATCTTTACTACCGGCTCAACGTGATCGAAGCGCACGTGCCACCGCTGCGCGAACGGCACGAGGACATCCCGGTGCTG
GTGGAACACATCCTGGAGCGTCTCGGCGAAGCCTGGGAGACCCGGCCGCCGGCGGTCAGCGAGCGGGCTATGTCCGCCCT
CGCCGGCTACCGCTTTCCCGGCAACGTGCGCGAACTGGAAAACACCCTGGAGCGTGCCCTCACCCTCTGCGACGGCGAGA
TGATCGAACCCGAGCATCTGCACCTGCCCAGCGACGATGGGCCGCAGCCGGCCACCGGCAACGGCGGCGGCCGCCACCCG
CAGCTGCCGCTGGAAGACTATCTGCAGGAGATCGAGAAACAGGAAATCCTGCGCGCGCTGGACACCACCCACTGGAACCG
CACCGCGGCCGCCAAGAAGCTGGGCATGACCTTCCGCTCGCTGCGCTACCGGCTAAAGAAGCTGGAACTGGATCAGGACG
GCGCCCCGGACAGCGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(408-448)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.607

97.603

0.601
  pilR Acinetobacter baumannii strain A118

48.734

100

0.503

Multiple sequence alignment