Detailed information NTG1093982

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMG4L_RS08790
• Genome accession: NZ_CP179933
• Coordinates: 1904306..1905691 (+)
• Length: 461 a.a.
• NCBI ID: WP_414430761.1
• Uniprot ID: -
• Organism: Alcanivorax sp. IL1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1899306..1910691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMG4L_RS08770 (ACMG4L_08770)	-	1899855..1900670 (+)	816	WP_035250059.1	outer membrane protein assembly factor BamD	-
ACMG4L_RS08775 (ACMG4L_08775)	-	1900786..1902411 (-)	1626	WP_035250057.1	NAD+ synthase	-
ACMG4L_RS08780 (ACMG4L_08780)	-	1902478..1902747 (+)	270	WP_232222144.1	PP0621 family protein	-
ACMG4L_RS08785 (ACMG4L_08785)	-	1902737..1904293 (+)	1557	WP_035250052.1	sensor histidine kinase	-
ACMG4L_RS08790 (ACMG4L_08790)	pilR	1904306..1905691 (+)	1386	WP_414430761.1	sigma-54-dependent transcriptional regulator	Regulator
ACMG4L_RS08795 (ACMG4L_08795)	-	1905640..1906737 (-)	1098	WP_414430760.1	NAD(P)/FAD-dependent oxidoreductase	-
ACMG4L_RS08800 (ACMG4L_08800)	-	1906809..1907306 (+)	498	WP_272961741.1	GspH/FimT family pseudopilin	-
ACMG4L_RS08805 (ACMG4L_08805)	-	1907351..1907797 (-)	447	WP_035250048.1	type IV pilin protein	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 51510.84 Da
• Isoelectric Point: 5.4221

>NTDB_id=1093982 ACMG4L_RS08790 WP_414430761.1 1904306..1905691(+) (pilR) [Alcanivorax sp. IL1]
MSADTPHVLVVDDEADLRELLVITLGRMKLKATAAESLGAAKAALADGRFNLCLTDMNLGDGTGLELLQFIARHCPEMPT
AVITAYGSMETATDAMKYGAYDFIAKPVSLDRLRQLIEDGLDINEVEDHHEEEDNLIGEAPSMRALKAQVRKLARSQAPI
YISGESGSGKERIARLIHNLGSRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADL
PLHMQVKLLRAIQEKSVRPVGEPREFQVNLRILCATHKDLAQEMAEGRFRQDLFYRLNVIEAHVPPLRERQEDIPALVGH
ILKRLSEAWEIAPPIVSASAMKTLEQYTYPGNVRELENTLERALTLCDGKEIQEEHLRLQTDTLPKAATATTRETCTSPE
RPLGQPLEEFLQDIERQEILKALDATHWNRTAAAKKLGMTFRSLRYRLKKLDLDRSPGESE

Nucleotide

• Length: 1386 bp

>NTDB_id=1093982 ACMG4L_RS08790 WP_414430761.1 1904306..1905691(+) (pilR) [Alcanivorax sp. IL1]
ATGAGTGCTGACACCCCACACGTACTGGTTGTAGACGACGAAGCCGATCTGCGCGAACTGCTTGTCATCACCCTTGGGCG
CATGAAGCTCAAGGCCACAGCTGCCGAATCGCTTGGCGCAGCCAAAGCGGCCCTTGCCGATGGCAGATTCAACCTTTGTC
TGACGGATATGAATCTGGGTGATGGCACCGGGCTCGAGCTGCTGCAGTTTATTGCCAGGCATTGCCCGGAAATGCCCACC
GCCGTCATTACGGCTTATGGCAGCATGGAAACCGCCACCGATGCCATGAAGTACGGGGCCTATGACTTTATTGCCAAGCC
TGTGTCACTGGATCGACTTCGCCAGCTGATTGAAGACGGGCTGGACATCAACGAAGTGGAAGACCACCACGAGGAAGAGG
ACAACCTGATCGGGGAAGCGCCGAGCATGCGCGCCCTGAAAGCCCAGGTCCGCAAACTGGCACGCAGCCAGGCGCCAATC
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCGTATTGCCCGCCTGATACACAACCTGGGTTCTCGACGGGAAAAACC
CTTTGTCGCCGTCAACTGCGGGGCCATTCCGTCGGAGTTGATGGAAAGCGAATTCTTTGGCCATCGCAAAGGGGCATTCA
CCGGGGCCGTGGAAGACCGCAAGGGGCTATTCCGCGAAGCCGATGGCGGCACCCTTTTTCTGGATGAAGTGGCCGACCTG
CCCTTGCACATGCAAGTTAAACTGTTGCGAGCCATTCAGGAAAAATCCGTTCGCCCGGTGGGTGAGCCCCGGGAGTTTCA
GGTCAATCTTCGTATCCTCTGCGCTACCCACAAGGATCTGGCTCAAGAAATGGCGGAAGGGCGCTTCCGGCAAGATCTTT
TCTATCGGCTGAATGTCATCGAGGCGCACGTCCCCCCGTTGCGCGAACGCCAGGAAGATATTCCTGCTCTGGTCGGCCAC
ATTCTCAAGCGCCTCAGCGAAGCCTGGGAAATCGCCCCGCCAATCGTCAGCGCCTCTGCCATGAAAACCCTGGAACAATA
TACCTACCCAGGCAATGTCAGGGAGCTGGAAAATACTCTGGAAAGAGCCCTGACTTTATGTGATGGGAAAGAAATCCAGG
AAGAGCATCTAAGGCTGCAAACGGACACACTCCCGAAAGCCGCCACGGCAACGACACGGGAAACCTGTACCTCTCCAGAG
CGTCCATTAGGCCAGCCTCTCGAAGAATTTCTTCAAGACATCGAGAGGCAGGAAATTCTCAAGGCTCTGGATGCAACGCA
CTGGAACAGAACAGCTGCAGCAAAAAAACTGGGCATGACATTCCGGTCTTTACGTTACCGATTGAAGAAACTGGACCTTG
ATCGAAGCCCAGGAGAAAGCGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (411-451)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.955	96.963	0.581
pilR	Acinetobacter baumannii strain A118	47.436	100	0.482