Detailed information NTG1093968

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMG4N_RS16010
• Genome accession: NZ_CP179932
• Coordinates: 3484140..3485516 (+)
• Length: 458 a.a.
• NCBI ID: WP_297766747.1
• Uniprot ID: -
• Organism: Alcanivorax sp. IL2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3479140..3490516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMG4N_RS15990 (ACMG4N_15990)	-	3479661..3480476 (+)	816	WP_035250059.1	outer membrane protein assembly factor BamD	-
ACMG4N_RS15995 (ACMG4N_15995)	-	3480620..3482245 (-)	1626	WP_414432413.1	NAD+ synthase	-
ACMG4N_RS16000 (ACMG4N_16000)	-	3482312..3482581 (+)	270	WP_297766744.1	PP0621 family protein	-
ACMG4N_RS16005 (ACMG4N_16005)	-	3482571..3484127 (+)	1557	WP_297766745.1	sensor histidine kinase	-
ACMG4N_RS16010 (ACMG4N_16010)	pilR	3484140..3485516 (+)	1377	WP_297766747.1	sigma-54-dependent transcriptional regulator	Regulator
ACMG4N_RS16015 (ACMG4N_16015)	-	3485560..3486636 (-)	1077	WP_414432415.1	NAD(P)/FAD-dependent oxidoreductase	-
ACMG4N_RS16020 (ACMG4N_16020)	-	3486713..3487276 (-)	564	WP_297766750.1	GspH/FimT family pseudopilin	-
ACMG4N_RS16025 (ACMG4N_16025)	-	3487490..3487906 (-)	417	WP_297766752.1	type IV pilin protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 51313.51 Da
• Isoelectric Point: 5.3880

>NTDB_id=1093968 ACMG4N_RS16010 WP_297766747.1 3484140..3485516(+) (pilR) [Alcanivorax sp. IL2]
MSADTPHVLVVDDEADLRELLVITLGRMKLKATAAESLGAAKAALADSRFDLCLTDMNLGDGTGLELLQFIARHCPEMPT
AVITAYGSMETATDAMKYGAYDFIAKPVALDRLRQLIEDGLDINEVEDHHEEEDNLIGEAPSMRALKAQVRKLARSQAPI
YISGESGSGKERIARLIHNLGSRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADL
PLHMQVKLLRAIQEKSVRPVGETREFQVNLRILCATHKDLAHEMAEGRFRQDLFYRLNVIEAHVPPLRERQEDIPALVGH
ILKRLSEAWEISPPIVSTTAMKTLEQYAYPGNVRELENTLERALTLCDGAEIHEEHLRLQADTLPASTTAHAPETHTTPD
RPLHQPLEDFLQDIEKQEILKALDATHWNRTAAAKKLGMTFRSLRYRLKKLELDREEE

Nucleotide

• Length: 1377 bp

>NTDB_id=1093968 ACMG4N_RS16010 WP_297766747.1 3484140..3485516(+) (pilR) [Alcanivorax sp. IL2]
ATGAGTGCTGACACCCCACACGTACTGGTTGTAGACGACGAAGCCGATCTGCGCGAACTGCTTGTCATCACCCTTGGGCG
CATGAAGCTCAAGGCCACAGCCGCCGAATCGCTCGGCGCAGCCAAAGCAGCCCTTGCCGATAGCAGATTCGACCTTTGTC
TGACGGATATGAATCTGGGCGATGGCACCGGGCTCGAGCTGCTGCAGTTTATTGCCCGGCATTGCCCGGAAATGCCCACC
GCCGTCATTACGGCTTATGGCAGCATGGAAACCGCCACCGATGCCATGAAGTACGGGGCCTATGACTTTATTGCCAAGCC
TGTGGCATTGGATCGACTGCGCCAGCTGATTGAAGACGGGCTGGACATCAACGAAGTGGAAGACCACCACGAGGAAGAGG
ACAACCTGATCGGCGAAGCGCCGAGCATGCGCGCCCTGAAAGCTCAGGTCCGCAAACTGGCACGCAGCCAGGCGCCAATC
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCGTATTGCCCGCCTGATACACAATCTGGGCTCTCGGCGGGAAAAACC
CTTTGTCGCCGTCAACTGCGGCGCCATTCCGTCGGAGTTGATGGAAAGCGAGTTTTTTGGCCATCGCAAAGGGGCGTTCA
CCGGGGCCGTGGAAGACCGCAAGGGCCTGTTCCGCGAAGCCGATGGCGGCACCCTGTTTCTGGATGAAGTGGCTGACCTG
CCCTTGCACATGCAGGTCAAACTGCTACGAGCCATTCAGGAAAAATCCGTTCGCCCGGTGGGTGAGACCCGGGAATTTCA
GGTCAACCTTCGTATCCTTTGCGCTACCCACAAGGACCTGGCTCATGAAATGGCGGAAGGGCGCTTCCGGCAGGATCTTT
TCTATCGGCTGAATGTCATTGAAGCCCATGTTCCCCCGTTGCGTGAACGTCAGGAAGATATCCCTGCTCTGGTCGGCCAT
ATTCTCAAGCGCCTCAGCGAAGCCTGGGAAATCTCGCCCCCGATAGTCAGCACAACGGCAATGAAAACCCTGGAGCAGTA
CGCTTACCCGGGCAATGTGCGGGAGCTGGAAAACACTCTGGAGCGAGCCCTGACTCTGTGTGACGGCGCGGAAATCCATG
AAGAGCATCTTCGCCTGCAAGCAGATACGCTACCTGCGTCCACCACCGCCCACGCACCGGAAACCCACACCACCCCCGAT
CGCCCCCTGCATCAACCGCTGGAAGACTTTCTTCAAGACATAGAAAAACAGGAAATTCTCAAGGCTCTGGATGCAACGCA
CTGGAACCGGACTGCTGCCGCGAAAAAGCTGGGCATGACATTCCGGTCTCTGCGTTACCGGCTCAAGAAGCTGGAGCTGG
ACCGGGAAGAAGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-117)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Bacterial regulatory protein, Fis family (HTH_8) (411-451)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.403	97.598	0.59
pilR	Acinetobacter baumannii strain A118	48.093	100	0.496