Detailed information NTG1093927

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACMG4M_RS04220
• Genome accession: NZ_CP179931
• Coordinates: 889023..890408 (-)
• Length: 461 a.a.
• NCBI ID: WP_414430761.1
• Uniprot ID: -
• Organism: Alcanivorax sp. IL3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 884023..895408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMG4M_RS04205 (ACMG4M_04205)	-	886917..887363 (+)	447	WP_035250048.1	type IV pilin protein	-
ACMG4M_RS04210 (ACMG4M_04210)	-	887408..887905 (-)	498	WP_272961741.1	GspH/FimT family pseudopilin	-
ACMG4M_RS04215 (ACMG4M_04215)	-	887977..889074 (+)	1098	WP_414430760.1	NAD(P)/FAD-dependent oxidoreductase	-
ACMG4M_RS04220 (ACMG4M_04220)	pilR	889023..890408 (-)	1386	WP_414430761.1	sigma-54-dependent transcriptional regulator	Regulator
ACMG4M_RS04225 (ACMG4M_04225)	-	890421..891977 (-)	1557	WP_035250052.1	sensor histidine kinase	-
ACMG4M_RS04230 (ACMG4M_04230)	-	891967..892236 (-)	270	WP_232222144.1	PP0621 family protein	-
ACMG4M_RS04235 (ACMG4M_04235)	-	892303..893928 (+)	1626	WP_035250057.1	NAD+ synthase	-
ACMG4M_RS04240 (ACMG4M_04240)	-	894044..894859 (-)	816	WP_035250059.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 51510.84 Da
• Isoelectric Point: 5.4221

>NTDB_id=1093927 ACMG4M_RS04220 WP_414430761.1 889023..890408(-) (pilR) [Alcanivorax sp. IL3]
MSADTPHVLVVDDEADLRELLVITLGRMKLKATAAESLGAAKAALADGRFNLCLTDMNLGDGTGLELLQFIARHCPEMPT
AVITAYGSMETATDAMKYGAYDFIAKPVSLDRLRQLIEDGLDINEVEDHHEEEDNLIGEAPSMRALKAQVRKLARSQAPI
YISGESGSGKERIARLIHNLGSRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLDEVADL
PLHMQVKLLRAIQEKSVRPVGEPREFQVNLRILCATHKDLAQEMAEGRFRQDLFYRLNVIEAHVPPLRERQEDIPALVGH
ILKRLSEAWEIAPPIVSASAMKTLEQYTYPGNVRELENTLERALTLCDGKEIQEEHLRLQTDTLPKAATATTRETCTSPE
RPLGQPLEEFLQDIERQEILKALDATHWNRTAAAKKLGMTFRSLRYRLKKLDLDRSPGESE

Nucleotide

• Length: 1386 bp

>NTDB_id=1093927 ACMG4M_RS04220 WP_414430761.1 889023..890408(-) (pilR) [Alcanivorax sp. IL3]
ATGAGTGCTGACACCCCACACGTACTGGTTGTAGACGACGAAGCCGATCTGCGCGAACTGCTTGTCATCACCCTTGGGCG
CATGAAGCTCAAGGCCACAGCTGCCGAATCGCTTGGCGCAGCCAAAGCGGCCCTTGCCGATGGCAGATTCAACCTTTGTC
TGACGGATATGAATCTGGGTGATGGCACCGGGCTCGAGCTGCTGCAGTTTATTGCCAGGCATTGCCCGGAAATGCCCACC
GCCGTCATTACGGCTTATGGCAGCATGGAAACCGCCACCGATGCCATGAAGTACGGGGCCTATGACTTTATTGCCAAGCC
TGTGTCACTGGATCGACTTCGCCAGCTGATTGAAGACGGGCTGGACATCAACGAAGTGGAAGACCACCACGAGGAAGAGG
ACAACCTGATCGGGGAAGCGCCGAGCATGCGCGCCCTGAAAGCCCAGGTCCGCAAACTGGCACGCAGCCAGGCGCCAATC
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCGTATTGCCCGCCTGATACACAACCTGGGTTCTCGACGGGAAAAACC
CTTTGTCGCCGTCAACTGCGGGGCCATTCCGTCGGAGTTGATGGAAAGCGAATTCTTTGGCCATCGCAAAGGGGCATTCA
CCGGGGCCGTGGAAGACCGCAAGGGGCTATTCCGCGAAGCCGATGGCGGCACCCTTTTTCTGGATGAAGTGGCCGACCTG
CCCTTGCACATGCAAGTTAAACTGTTGCGAGCCATTCAGGAAAAATCCGTTCGCCCGGTGGGTGAGCCCCGGGAGTTTCA
GGTCAATCTTCGTATCCTCTGCGCTACCCACAAGGATCTGGCTCAAGAAATGGCGGAAGGGCGCTTCCGGCAAGATCTTT
TCTATCGGCTGAATGTCATCGAGGCGCACGTCCCCCCGTTGCGCGAACGCCAGGAAGATATTCCTGCTCTGGTCGGCCAC
ATTCTCAAGCGCCTCAGCGAAGCCTGGGAAATCGCCCCGCCAATCGTCAGCGCCTCTGCCATGAAAACCCTGGAACAATA
TACCTACCCAGGCAATGTCAGGGAGCTGGAAAATACTCTGGAAAGAGCCCTGACTTTATGTGATGGGAAAGAAATCCAGG
AAGAGCATCTAAGGCTGCAAACGGACACACTCCCGAAAGCCGCCACGGCAACGACACGGGAAACCTGTACCTCTCCAGAG
CGTCCATTAGGCCAGCCTCTCGAAGAATTTCTTCAAGACATCGAGAGGCAGGAAATTCTCAAGGCTCTGGATGCAACGCA
CTGGAACAGAACAGCTGCAGCAAAAAAACTGGGCATGACATTCCGGTCTTTACGTTACCGATTGAAGAAACTGGACCTTG
ATCGAAGCCCAGGAGAAAGCGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (411-451)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (8-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.955	96.963	0.581
pilR	Acinetobacter baumannii strain A118	47.436	100	0.482