Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACMGG8_RS08500 Genome accession   NZ_CP179909
Coordinates   1835762..1837090 (-) Length   442 a.a.
NCBI ID   WP_414159447.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-45     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830762..1842090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGG8_RS08465 (ACMGG8_08465) - 1831177..1831701 (-) 525 WP_060841161.1 GspH/FimT family protein -
  ACMGG8_RS08470 (ACMGG8_08470) pilV 1832103..1832546 (+) 444 WP_060841160.1 type IV pilus modification protein PilV -
  ACMGG8_RS08475 (ACMGG8_08475) - 1832543..1833253 (+) 711 WP_060841159.1 PilW family protein -
  ACMGG8_RS08480 (ACMGG8_08480) - 1833253..1833735 (+) 483 WP_414159443.1 PilX N-terminal domain-containing pilus assembly protein -
  ACMGG8_RS08485 (ACMGG8_08485) - 1833941..1834192 (+) 252 WP_414159444.1 hypothetical protein -
  ACMGG8_RS08490 (ACMGG8_08490) - 1834208..1834609 (+) 402 WP_414159445.1 type IV pilin protein -
  ACMGG8_RS08495 (ACMGG8_08495) thiO 1834665..1835765 (+) 1101 WP_414159446.1 glycine oxidase ThiO -
  ACMGG8_RS08500 (ACMGG8_08500) pilR 1835762..1837090 (-) 1329 WP_414159447.1 sigma-54-dependent transcriptional regulator Regulator
  ACMGG8_RS08505 (ACMGG8_08505) - 1837346..1837579 (-) 234 WP_060841153.1 PP0621 family protein -
  ACMGG8_RS08510 (ACMGG8_08510) - 1837707..1838729 (-) 1023 WP_060841152.1 outer membrane protein assembly factor BamD -
  ACMGG8_RS08515 (ACMGG8_08515) rluD 1838880..1839842 (+) 963 WP_016964308.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACMGG8_RS08520 (ACMGG8_08520) pgeF 1839839..1840564 (+) 726 WP_060841151.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49709.25 Da        Isoelectric Point: 8.2991

>NTDB_id=1093799 ACMGG8_RS08500 WP_414159447.1 1835762..1837090(-) (pilR) [Pseudomonas sp. BNK-45]
MNPQHRALVVDETREIRSVLEITLGRMRLHTQSARSLQEARSHLAREHFDLCLTDLHLPDGSGLELLQHIRRHHPQLPVA
LLSHETCAPTSALDAETCDLLPKPLDLKRLRDWVATALKRQHSGVATRFSEQLPGDSPPMVILRRHIAKLAASLAPLYIS
GESGSGKERVARLIHQSGPRAAQPFVPVNCGAIPGELMESEFFGHRKGSFSGALMDQPGLFRAAHGGTLFLDEIADLPLV
MQVKLLRTLQEKSVRSVGAQEEQAVDVRILCATHKDLKSEVQAGRFRQDLFYRLNVIELRVPALRERRDDIGLLARHILQ
RLAASSGRPAPQLHPQALQALERYDFPGNVRELENLLERALALCESPWIEVADLNLPVPEPEDELPPGPALNLDLARHLQ
QVERQLLLQTLEQTRWNRTEAARRLSLSLRSMRYRMKKLGLD

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=1093799 ACMGG8_RS08500 WP_414159447.1 1835762..1837090(-) (pilR) [Pseudomonas sp. BNK-45]
ATGAATCCACAGCACAGAGCGCTGGTGGTCGATGAGACCAGGGAAATCCGCTCTGTGCTGGAGATCACCCTGGGCCGCAT
GCGCCTGCACACCCAAAGCGCCCGCAGCCTGCAGGAGGCCCGCAGCCACCTGGCCCGGGAGCATTTCGACCTGTGCCTGA
CCGACCTGCACCTGCCGGACGGCAGCGGCCTGGAGCTGCTGCAGCATATTCGCCGGCACCATCCCCAATTGCCGGTGGCC
CTGCTCAGCCACGAGACCTGCGCGCCAACCAGCGCCCTGGATGCCGAAACCTGCGACCTGCTGCCAAAGCCTCTGGACCT
CAAGCGCCTGCGGGACTGGGTGGCCACCGCCCTGAAACGACAACACTCGGGTGTGGCGACTCGCTTCTCTGAGCAACTGC
CGGGGGATTCGCCGCCCATGGTCATCCTGCGCCGGCATATTGCCAAACTGGCCGCCAGCCTCGCGCCGCTCTACATCAGC
GGCGAGTCCGGCAGCGGCAAGGAACGAGTGGCCCGATTGATCCACCAGTCAGGCCCCAGAGCCGCACAGCCCTTTGTCCC
GGTCAACTGCGGAGCGATTCCCGGCGAACTGATGGAGAGCGAGTTTTTCGGTCACCGCAAGGGCAGCTTCAGCGGCGCCC
TGATGGATCAGCCCGGACTGTTCCGGGCCGCTCATGGCGGCACCCTGTTCCTTGACGAGATCGCCGACCTGCCGCTGGTC
ATGCAGGTGAAACTGCTGCGAACCCTGCAGGAAAAGTCAGTGCGCTCAGTAGGCGCTCAGGAAGAACAGGCGGTGGATGT
ACGAATCCTCTGTGCGACCCACAAGGATCTGAAAAGCGAAGTGCAAGCCGGACGCTTTCGCCAGGACCTGTTTTATCGGC
TGAATGTCATCGAGTTGCGGGTTCCCGCCCTGCGCGAACGTCGGGACGATATCGGGCTACTGGCCCGGCACATCCTCCAG
CGTCTGGCCGCCAGCAGTGGCCGGCCAGCCCCACAGTTGCACCCACAAGCGCTGCAAGCCCTGGAGCGCTACGACTTCCC
CGGCAATGTGCGTGAACTGGAGAACCTGCTGGAACGGGCCCTGGCCCTTTGCGAGAGTCCGTGGATCGAAGTGGCAGACC
TGAATTTACCGGTCCCCGAACCTGAGGACGAGCTCCCGCCGGGGCCCGCCCTCAATCTCGATCTGGCGCGGCACCTGCAG
CAGGTGGAGCGCCAGTTGCTGCTCCAGACCCTGGAGCAAACCCGCTGGAACCGCACGGAGGCGGCCCGGCGGTTGAGCCT
GTCGCTGCGTTCGATGCGCTATCGCATGAAGAAGCTCGGACTGGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-299)

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(8-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.851

100

0.62
  pilR Acinetobacter baumannii strain A118

42.672

100

0.448

Multiple sequence alignment