Detailed information NTG1093767

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMGGG_RS02255
• Genome accession: NZ_CP179908
• Coordinates: 461055..461921 (-)
• Length: 288 a.a.
• NCBI ID: WP_414154794.1
• Uniprot ID: -
• Organism: Pseudomonas sp. BNK-44-b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 456055..466921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMGGG_RS02220 (ACMGGG_02220)	phnN	456300..456860 (+)	561	WP_054895235.1	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	-
ACMGGG_RS02225 (ACMGGG_02225)	-	456966..458261 (-)	1296	WP_054895236.1	NAD(P)/FAD-dependent oxidoreductase	-
ACMGGG_RS02230 (ACMGGG_02230)	-	458346..458519 (-)	174	WP_054895237.1	DUF3094 family protein	-
ACMGGG_RS02235 (ACMGGG_02235)	-	458663..459292 (-)	630	WP_414154792.1	DUF1780 domain-containing protein	-
ACMGGG_RS02240 (ACMGGG_02240)	-	459405..460100 (+)	696	WP_414154793.1	energy-coupling factor ABC transporter permease	-
ACMGGG_RS02245 (ACMGGG_02245)	yacG	460235..460435 (-)	201	WP_054895240.1	DNA gyrase inhibitor YacG	-
ACMGGG_RS02250 (ACMGGG_02250)	coaE	460432..461055 (-)	624	WP_054895241.1	dephospho-CoA kinase	-
ACMGGG_RS02255 (ACMGGG_02255)	pilD	461055..461921 (-)	867	WP_414154794.1	prepilin peptidase	Machinery gene
ACMGGG_RS02260 (ACMGGG_02260)	-	461923..463131 (-)	1209	WP_414154795.1	type II secretion system F family protein	-
ACMGGG_RS02265 (ACMGGG_02265)	-	463345..463785 (+)	441	WP_414154796.1	pilin	-
ACMGGG_RS02275 (ACMGGG_02275)	rclC	464458..465057 (-)	600	WP_112897383.1	reactive chlorine resistance membrane protein RclC	-
ACMGGG_RS02280 (ACMGGG_02280)	-	465230..466177 (+)	948	WP_112897385.1	AraC family transcriptional regulator	-
ACMGGG_RS02285 (ACMGGG_02285)	-	466228..466488 (-)	261	WP_193217512.1	DUF2790 domain-containing protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31568.59 Da
• Isoelectric Point: 7.2856

>NTDB_id=1093767 ACMGGG_RS02255 WP_414154794.1 461055..461921(-) (pilD) [Pseudomonas sp. BNK-44-b]
MNLWTFLADQPGFFLASAAVLGLLVGSFLNVLVHRLPVMLERQWQNEAREVLGMPVEAHERFDLCLPASHCPGCGHRIRA
WENIPVVSYLALRGRCSACKGRISLRYPLVELACAGLSLVVAWHFGVSVQALLALVLTWCLLALSLIDAEHQLLPDVLVL
PALWLGLVVNAFGVFVPLADALWGAVVGYLSLWSVYWLFRLVTGKEGLGYGDFKLLALLGAWGGWQVLPLTLLLSSVVGA
VIGLCLLRLRKASLGATMPFGPYLAIAGWIAWLWGDEIYASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1093767 ACMGGG_RS02255 WP_414154794.1 461055..461921(-) (pilD) [Pseudomonas sp. BNK-44-b]
ATGAATCTGTGGACTTTTCTTGCCGACCAGCCAGGGTTCTTCCTGGCGAGTGCAGCCGTGCTCGGGCTGCTGGTGGGCAG
TTTTCTGAATGTGCTGGTGCATCGGTTGCCGGTGATGCTCGAACGCCAGTGGCAGAACGAGGCGCGTGAAGTATTGGGGA
TGCCGGTGGAGGCGCATGAGCGTTTCGACCTGTGCCTGCCGGCCTCGCACTGCCCGGGCTGCGGGCATCGGATTCGGGCG
TGGGAAAACATTCCGGTGGTGAGTTACCTGGCCCTGCGTGGGCGCTGCTCGGCGTGCAAGGGGCGGATCAGCTTGCGTTA
TCCGCTGGTGGAGCTGGCCTGCGCGGGGCTGTCGCTGGTGGTGGCGTGGCATTTCGGGGTGAGCGTGCAGGCGCTGTTGG
CGCTGGTGCTGACGTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCGGAGCATCAATTGCTGCCGGATGTGCTGGTGCTG
CCGGCGCTGTGGCTGGGGCTGGTGGTCAATGCCTTCGGGGTGTTCGTGCCGCTGGCCGATGCGCTGTGGGGTGCGGTGGT
CGGTTACCTGAGCCTGTGGTCGGTGTATTGGCTGTTTCGGCTGGTCACCGGCAAGGAGGGCCTGGGCTATGGCGATTTCA
AGCTGCTGGCGCTGCTGGGTGCCTGGGGCGGCTGGCAGGTGCTGCCGCTGACACTGTTGCTGTCGTCGGTAGTGGGGGCG
GTGATCGGGCTGTGTCTGCTGCGGCTGCGCAAGGCTTCGCTGGGGGCGACGATGCCTTTTGGGCCCTATCTGGCAATTGC
GGGCTGGATCGCATGGCTCTGGGGTGATGAAATATACGCTTCCTACATGCAACTGCTCGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.688	96.875	0.51
pilD	Acinetobacter baumannii D1279779	50	97.222	0.486
pilD	Acinetobacter nosocomialis M2	49.286	97.222	0.479
pilD	Vibrio campbellii strain DS40M4	50.185	94.097	0.472
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451