Detailed information NTG1093542

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMGF5_RS05335
• Genome accession: NZ_CP179898
• Coordinates: 1188504..1189370 (+)
• Length: 288 a.a.
• NCBI ID: WP_414157625.1
• Uniprot ID: -
• Organism: Pseudomonas sp. BNK-15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1183504..1194370

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMGF5_RS05310 (ACMGF5_05310)	-	1183818..1184774 (-)	957	WP_414157622.1	hypothetical protein	-
ACMGF5_RS05315 (ACMGF5_05315)	-	1185064..1186359 (-)	1296	WP_414157623.1	tyrosine-type recombinase/integrase	-
ACMGF5_RS05325 (ACMGF5_05325)	-	1186667..1187077 (-)	411	WP_204918942.1	pilin	-
ACMGF5_RS05330 (ACMGF5_05330)	-	1187293..1188501 (+)	1209	WP_414157624.1	type II secretion system F family protein	-
ACMGF5_RS05335 (ACMGF5_05335)	pilD	1188504..1189370 (+)	867	WP_414157625.1	prepilin peptidase	Machinery gene
ACMGF5_RS05340 (ACMGF5_05340)	coaE	1189370..1189993 (+)	624	WP_012316340.1	dephospho-CoA kinase	-
ACMGF5_RS05345 (ACMGF5_05345)	yacG	1189990..1190190 (+)	201	WP_012316341.1	DNA gyrase inhibitor YacG	-
ACMGF5_RS05350 (ACMGF5_05350)	-	1190321..1191061 (-)	741	WP_052326222.1	energy-coupling factor ABC transporter permease	-
ACMGF5_RS05355 (ACMGF5_05355)	-	1191096..1191725 (+)	630	WP_012316343.1	DUF1780 domain-containing protein	-
ACMGF5_RS05360 (ACMGF5_05360)	-	1191858..1192031 (+)	174	WP_012316344.1	DUF3094 domain-containing protein	-
ACMGF5_RS05365 (ACMGF5_05365)	-	1192116..1193411 (+)	1296	WP_251962438.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31701.56 Da
• Isoelectric Point: 6.2130

>NTDB_id=1093542 ACMGF5_RS05335 WP_414157625.1 1188504..1189370(+) (pilD) [Pseudomonas sp. BNK-15]
MTLWTLLAEQPAYFFTLATVLGLLVGSFINVVAYRLPIMLERQWQREAQEALGLPTDEHERFDLCLPASRCPHCGHAIRA
WENIPVLSYLALRGRCSACKQPIGSRYPLVELACALLSLTVAWHSGAGMEALALLAFTWSLLALSLIDHDKQILPDVLVL
PTLWLGLIVNVFDTVVPLSDAVWGAVAGYLSLWIVYWLFKLITGKEGMGYGDFKLLALIGAWGGWQVVPLTLMLSSLVGA
VVGLCMLRLRSHSMGTAIPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=1093542 ACMGF5_RS05335 WP_414157625.1 1188504..1189370(+) (pilD) [Pseudomonas sp. BNK-15]
ATGACTTTATGGACTTTACTGGCCGAACAGCCGGCGTACTTCTTCACCCTGGCGACCGTGCTTGGCCTGTTGGTCGGCAG
CTTCATCAATGTGGTGGCGTATCGGCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAAGCGCAGGAGGCGCTGGGGC
TGCCGACCGATGAGCATGAGCGCTTCGACCTGTGCCTGCCCGCTTCACGTTGCCCGCACTGTGGGCATGCGATCCGTGCC
TGGGAAAATATTCCGGTGCTCAGTTACCTGGCCTTGCGCGGGCGCTGCTCTGCGTGCAAACAGCCTATCGGCTCACGGTA
CCCGCTGGTGGAGCTGGCCTGCGCCTTGCTGTCGCTGACGGTGGCCTGGCATTCCGGTGCCGGGATGGAGGCACTGGCCT
TGCTGGCCTTTACCTGGAGCCTGCTGGCGCTGAGCCTTATCGACCACGACAAGCAGATCCTGCCGGATGTGCTGGTGCTG
CCAACGCTGTGGCTGGGGCTGATCGTCAATGTTTTCGATACCGTGGTGCCATTGTCCGATGCCGTCTGGGGCGCGGTGGC
CGGTTATCTCAGCCTGTGGATAGTGTATTGGTTGTTCAAACTGATCACCGGCAAGGAAGGCATGGGTTACGGCGACTTCA
AGCTGCTGGCGCTGATCGGGGCCTGGGGCGGCTGGCAGGTAGTGCCGCTGACCTTGATGCTGTCGTCGCTGGTCGGGGCG
GTGGTGGGGCTATGCATGTTGCGCCTGCGCAGCCATTCGATGGGTACGGCGATACCTTTTGGTCCTTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACCTGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.874	96.181	0.528
pilD	Acinetobacter baumannii D1279779	50.534	97.569	0.493
pilD	Acinetobacter nosocomialis M2	49.822	97.569	0.486
pilD	Vibrio campbellii strain DS40M4	50.362	95.833	0.483
pilD	Neisseria gonorrhoeae MS11	49.057	92.014	0.451