Detailed information NTG0109345

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HW07_RS24165
• Genome accession: NZ_CP008859
• Coordinates: 5118266..5119138 (+)
• Length: 290 a.a.
• NCBI ID: WP_059297991.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain H5708
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5113266..5124138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HW07_RS24150 (HW07_09155)	pilA	5114649..5115113 (-)	465	WP_016264268.1	pilin	Machinery gene
HW07_RS24155 (HW07_09150)	pilB	5115344..5117044 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HW07_RS24160 (HW07_09145)	pilC	5117048..5118265 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
HW07_RS24165 (HW07_09140)	pilD	5118266..5119138 (+)	873	WP_059297991.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
HW07_RS24170 (HW07_09135)	coaE	5119135..5119746 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
HW07_RS24175 (HW07_09130)	yacG	5119743..5119943 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
HW07_RS24180 (HW07_09125)	-	5119980..5120189 (-)	210	WP_003094660.1	hypothetical protein	-
HW07_RS24185 (HW07_09120)	-	5120295..5120984 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
HW07_RS24190 (HW07_09115)	-	5120981..5121451 (-)	471	WP_003094664.1	hypothetical protein	-
HW07_RS24195 (HW07_09110)	-	5121448..5121873 (-)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
HW07_RS24200 (HW07_09105)	-	5122006..5122635 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
HW07_RS24205 (HW07_09100)	-	5122632..5123081 (+)	450	WP_003161439.1	MOSC domain-containing protein	-
HW07_RS24210 (HW07_30400)	-	5123107..5123277 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31891.94 Da
• Isoelectric Point: 7.7068

>NTDB_id=109345 HW07_RS24165 WP_059297991.1 5118266..5119138(+) (pilD) [Pseudomonas aeruginosa strain H5708]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRMRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=109345 HW07_RS24165 WP_059297991.1 5118266..5119138(+) (pilD) [Pseudomonas aeruginosa strain H5708]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCATGCGCAACGCCGAAAGCGGCACGCCGATCCCTTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Acinetobacter baumannii D1279779	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469